Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0082
         (397 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.45 
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.0  
SB_40185| Best HMM Match : WD40 (HMM E-Value=0)                        28   2.4  
SB_19015| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         27   4.2  
SB_47275| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_26558| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.3  
SB_41008| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   26   9.6  
SB_12996| Best HMM Match : PHZA_PHZB (HMM E-Value=8.6)                 26   9.6  
SB_11722| Best HMM Match : Fer4 (HMM E-Value=0.25)                     26   9.6  

>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 125 SRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRLIPR 265
           +R+  E +L + H L PP        +S   SA  +SA   F  IPR
Sbjct: 35  ARYRAEAQLNRRHGLSPPTPPEGISPLSSSSSASSSSAASPFHTIPR 81


>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1560

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 80  DSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDS 184
           DS  ++DP G+RR++  F  E R V    L+  D+
Sbjct: 101 DSPPIKDPPGVRRKIEEFTIEQRAVNKRRLDLLDT 135


>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 503

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 345 CSVREEPQFRTFGSCTRPSG 286
           CS R  P+ R F +CT PSG
Sbjct: 437 CSARTPPRRRPFTACTSPSG 456


>SB_19015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 6   IPSPDIXLSYPRTFGAVLHVLRKTPIASISAIQMGF 113
           IP+  I +SY R +G   H LR+  IAS+   + GF
Sbjct: 193 IPAIIICISYGRIYGVAKHQLRQ--IASLDRTRRGF 226


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +2

Query: 101  PNGLRRRVSRFECET----RLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 250
            PN LR R S F         L    CL PP++ G    I L D + LA    A+
Sbjct: 1246 PNDLRGRWSDFFSNLFQLEHLELDRCLRPPNAEGKPWLIILSDGSDLAYGFAAY 1299


>SB_47275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +2

Query: 215 DSARLASALEAFRLIPRMVASHHRPLGRVHEPNVRNCGSSRTEQYYYRNDKPS 373
           D+  +++   AF L P M+ +HH  LG + +P + N   +R  +Y+  N + S
Sbjct: 51  DALFISTVHTAFGLTPEMLDNHH--LGFLSDPRLLNTAVTRA-KYHLTNCRRS 100


>SB_26558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 879

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -2

Query: 198 TVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSXFFLTRAGRLRRSGDN 31
           TV+P+E   SK    T  +S + R  +R +   SR   ++     +AG LRRS  N
Sbjct: 762 TVDPQELMLSKSDLSTGTLSRAVRVAKRTTRKVSRALSMNKTPSKKAGLLRRSSSN 817


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 195  VEPRESGGSK-QCDFTSRVSHSKRETRRRSPFGSRRSMLSXFFLTRAGRLRRS 40
            +E  +S G + +CD TSR+S   R       F ++R++   F   +     RS
Sbjct: 2037 IEDLDSFGQRDRCDGTSRISRQSRSRIETDVFPTKRNLSHSFKDVKTSESERS 2089


>SB_41008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 104 NGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 226
           NG+R  +  + C  +     C  P +S    +SIS+    R
Sbjct: 39  NGIRHEMHSYSCPPKQKLHICTRPVESSAKYISISVTSRGR 79


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 215 DSARLASALEAFRLIPRMVASHHRPLGRVHEPNVRNCGSSRTEQY 349
           D+  +++   AF L P M+ +HH  LG + +P + N   +R + +
Sbjct: 711 DALFISTVHTAFGLTPEMLDNHH--LGFLSDPRLLNTAVTRAKYH 753


>SB_12996| Best HMM Match : PHZA_PHZB (HMM E-Value=8.6)
          Length = 455

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 21/87 (24%), Positives = 38/87 (43%)
 Frame = -2

Query: 291 SGRWCEATIRGISLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRR 112
           SG++   T   I  + + A A L      + +V   +    ++     R   S+ + RR+
Sbjct: 258 SGKYGTKTRITIPCHNNHAWAELPTEPPAIASVHGLDFEAERELRSLWRGGASRYQCRRK 317

Query: 111 SPFGSRRSMLSXFFLTRAGRLRRSGDN 31
           +  G  RS     ++T  G+L RSG +
Sbjct: 318 NSRGEGRSPDRPVYVTHEGKLYRSGQD 344


>SB_11722| Best HMM Match : Fer4 (HMM E-Value=0.25)
          Length = 401

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -2

Query: 186 RESGGSKQCDFTSRVSHSKRETR----RRSPFGSRRSMLSXFFLTRAGRLRRSGDNSXRC 19
           R+    +QC   SR SH KR+ +    + +    R+  +      R  R RR G +  +C
Sbjct: 11  RQKCRQRQCLKMSRDSHEKRQKKAVKMKHATSSGRKEKIKPASHDRPRRRRRMGSDDKKC 70

Query: 18  RGSE 7
            G+E
Sbjct: 71  -GAE 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,355,724
Number of Sequences: 59808
Number of extensions: 233515
Number of successful extensions: 740
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)