Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0078
         (988 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)             63   3e-10
SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)           54   2e-07
SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0)                31   1.1  
SB_52133| Best HMM Match : Glutaredoxin (HMM E-Value=4.4e-17)          29   4.4  
SB_1233| Best HMM Match : DUF547 (HMM E-Value=0)                       29   5.8  

>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
          Length = 1037

 Score = 63.3 bits (147), Expect = 3e-10
 Identities = 33/90 (36%), Positives = 51/90 (56%)
 Frame = +1

Query: 1   IQQFXKEAISXXKVVVXXKSXCPXXKLAKDVFEKVKQPIKVIELNERDDGNTXQXNLAQL 180
           IQ+  +++I+   V++  KS CP  K  K +FE +      +EL+  D+G   Q  L + 
Sbjct: 566 IQRLIEDSINNNAVMIFSKSFCPFCKKVKAIFESINVQYTAMELDLVDNGPAIQEALLEK 625

Query: 181 TGFRTVPQVFINGNCVGGGSDVKAXMNLEN 270
           +G +TVP V+I GN V GGSD+   +  EN
Sbjct: 626 SGQKTVPNVYIRGNHV-GGSDIITKLQEEN 654


>SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)
          Length = 111

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
 Frame = +1

Query: 10  FXKEAISXXKVVVXXKSXCPXXKLAKDVFEKVK-QPIKVIELNERDDGNTXQXNLAQLTG 186
           F +       +VV  K+ C    +AK +   V    + V EL +R+DG+  Q  L +LTG
Sbjct: 9   FVRSVTRSNNIVVFSKTACSFSIMAKKLLRDVGVSEMVVYELEQREDGHFIQDALKELTG 68

Query: 187 FRTVPQVFINGNCVGGGSD 243
             TVP VF+ G  +GGG +
Sbjct: 69  RGTVPNVFVKGQSIGGGME 87


>SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0)
          Length = 1031

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 133 NERDDGNTXQXNLAQLTGFRTVPQVFING 219
           +E DDG          TGF+T PQV +NG
Sbjct: 490 SENDDGRKAWKRFHDRTGFQTTPQVVVNG 518


>SB_52133| Best HMM Match : Glutaredoxin (HMM E-Value=4.4e-17)
          Length = 374

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 196 VPQVFINGNCVGGGSDV 246
           VPQVF+NG C+GG  ++
Sbjct: 279 VPQVFVNGICLGGSKEL 295


>SB_1233| Best HMM Match : DUF547 (HMM E-Value=0)
          Length = 382

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +1

Query: 37  KVVVXXKSXCPXXKLAKDVFEKVKQPIKVIELNERDDGNTXQXNLAQLTGFRTVPQVFIN 216
           +V +   + CP    AK      +  ++ +++N  D     +    + +G RTVPQ+F N
Sbjct: 4   RVTIFSITGCPFCVRAKTKLRD-ELNLEFVDIN-LDRHPERRQEAMERSGKRTVPQIFFN 61

Query: 217 GNCVGGGSDV 246
              VGG  D+
Sbjct: 62  NIHVGGFDDL 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,268,691
Number of Sequences: 59808
Number of extensions: 254301
Number of successful extensions: 343
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2931631446
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)