Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0058
(357 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.12
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.48
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.84
SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 29 1.5
SB_33106| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_48009| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_48013| Best HMM Match : Keratin_B2 (HMM E-Value=0.0058) 27 3.4
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11) 27 3.4
SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14) 27 5.9
SB_41008| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1283
Score = 32.3 bits (70), Expect = 0.12
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 289 ERPVVRSYHPRDMPERL*GRSQPSRIRQG-YAHCGAPRVGR 170
+ P+ R H RDMP P R+ +G Y H G P + R
Sbjct: 856 DTPMGRGMHQRDMPPEWHPAGNPRRVDEGPYMHDGPPHINR 896
>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 30.3 bits (65), Expect = 0.48
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 122 SRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHIPR 262
+R+ E +L + H L PP +S SA +SA F IPR
Sbjct: 35 ARYRAEAQLNRRHGLSPPTPPEGISPLSSSSSASSSSAASPFHTIPR 81
>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1560
Score = 29.5 bits (63), Expect = 0.84
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 77 DSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDS 181
DS ++DP G+RR++ F E R V L+ D+
Sbjct: 101 DSPPIKDPPGVRRKIEEFTIEQRAVNKRRLDLLDT 135
>SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 1236
Score = 28.7 bits (61), Expect = 1.5
Identities = 21/82 (25%), Positives = 34/82 (41%)
Frame = +2
Query: 41 LRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSA 220
LRS RVKKKTD + + + ++C++ + P G +I+ P S
Sbjct: 1121 LRSTSYRVKKKTDCYKVPSEVPDKTPTAAYDCDSSADEDDTPATPAPPGIPTAITDPPSR 1180
Query: 221 RLASALEAFRHIPRMVASHHRP 286
+ +A R + S H P
Sbjct: 1181 DVPPQSDADASETRAMDSSHCP 1202
>SB_33106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 28.7 bits (61), Expect = 1.5
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 276 CEATIRGICLNASKAEASLAESGKDMLTVEPR-ESGGSKQC-DFTSRVSHSKRETRRRS 106
C+A + ICL +A + +E GK + P +SG + QC T+ SH E + S
Sbjct: 10 CKAETKYICLICERAVCNRSEWGKPLAEETPNWKSGFAYQCWSCTTSSSHVDGENNKDS 68
>SB_48009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 28.3 bits (60), Expect = 1.9
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = +2
Query: 44 RSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 223
R D + KT +++ R+ L R + RFE + V + + ++ GS SLP + +
Sbjct: 48 RGNDQAPRGKTVAMEQRELE-LERMIDRFEKQQSEVMNAAQKFEEATGSLPDPSLPVANQ 106
Query: 224 LASALEAFRHIPRMVAS 274
L A+ R R++ S
Sbjct: 107 LELAVRKIREHIRVIIS 123
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 192 VEPRESGGSK-QCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRS 37
+E +S G + +CD TSR+S R F ++R++ F + S RS
Sbjct: 2037 IEDLDSFGQRDRCDGTSRISRQSRSRIETDVFPTKRNLSHSFKDVKTSESERS 2089
>SB_48013| Best HMM Match : Keratin_B2 (HMM E-Value=0.0058)
Length = 445
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 357 CDSNTAQYERNRSFGHLVHALRPSGRWC-EATIRGICLNASKAEASLAESGK 205
C S +S G +H + +G + E ++ C+NAS+ +A+ +G+
Sbjct: 245 CQSTGGYLHECQSTGGYLHECQSTGGYLHECQLQATCMNASQLQATCMNAGQ 296
>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
Length = 1692
Score = 27.5 bits (58), Expect = 3.4
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Frame = +2
Query: 98 PNGLRRRVSRFECET----RLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 247
PN LR R S F L CL PP++ G I L D + LA A+
Sbjct: 1246 PNDLRGRWSDFFSNLFQLEHLELDRCLRPPNAEGKPWLIILSDGSDLAYGFAAY 1299
>SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 327 NRSFGHLVHALRPSGRWCEATI 262
+R H+V A+ P GRW EA I
Sbjct: 17 SRLSAHVVQAVEPVGRWYEAYI 38
>SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)
Length = 1931
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 29 LYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPP 175
L D+R++ A V D++ RD GL R + + V+++C P
Sbjct: 1349 LIVDIRAKFATVLGSVDNLGARDAQGLSRDILMLLRLAQDVQTYCASAP 1397
>SB_41008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +2
Query: 101 NGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 223
NG+R + + C + C P +S +SIS+ R
Sbjct: 39 NGIRHEMHSYSCPPKQKLHICTRPVESSAKYISISVTSRGR 79
>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2509
Score = 26.2 bits (55), Expect = 7.8
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 23 TELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 160
+++ P L S + R+ +K RDP+ LRR + + V SH
Sbjct: 1827 SQVLPWLSSAEERLARKMAQPIGRDPSTLRREIDELKAFQAEVNSH 1872
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,989,571
Number of Sequences: 59808
Number of extensions: 228682
Number of successful extensions: 772
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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