Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0256
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14974| Best HMM Match : PA14 (HMM E-Value=0.73)                     31   1.0  
SB_14971| Best HMM Match : CHGN (HMM E-Value=0.0084)                   31   1.0  
SB_46305| Best HMM Match : SSDP (HMM E-Value=2)                        29   4.1  
SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19)             29   5.4  

>SB_14974| Best HMM Match : PA14 (HMM E-Value=0.73)
          Length = 611

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 751 PLRSVLSTV-IFYMSKKKSRLCTIYKLKLKM*TLINIIYT 635
           P +S L  +  F+  K KS LC   +L L+M T+INI+ T
Sbjct: 341 PTKSKLRVLNYFFKFKNKSTLCIPARLALRMDTVINIVIT 380


>SB_14971| Best HMM Match : CHGN (HMM E-Value=0.0084)
          Length = 598

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 751 PLRSVLSTV-IFYMSKKKSRLCTIYKLKLKM*TLINIIYT 635
           P +S L  +  F+  K KS LC   +L L+M T+INI+ T
Sbjct: 305 PTKSKLRVLNYFFKFKNKSTLCIPARLALRMDTVINIVLT 344


>SB_46305| Best HMM Match : SSDP (HMM E-Value=2)
          Length = 848

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 427 RNTVLYEVMLYSMYEISYRVIWHLL 501
           R T  Y  +L ++ ++SYR +WHLL
Sbjct: 91  RKTDFYNFVLINLGKMSYRDVWHLL 115


>SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19)
          Length = 672

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 131 VIYPLNVYGPISLSSNCSTQAMPPTLL 211
           VI P  VYGP+   SNC++  +P  LL
Sbjct: 195 VINPGLVYGPVLQGSNCTSMEIPCRLL 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,374,772
Number of Sequences: 59808
Number of extensions: 269384
Number of successful extensions: 482
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)