Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0240
         (385 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_27880| Best HMM Match : Activin_recp (HMM E-Value=5.1)              27   6.9  
SB_21| Best HMM Match : NOC3p (HMM E-Value=0.0058)                     27   6.9  

>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1421

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 235  IFTCLSKTCLFVNNLKSNLPTDIFIKGLQYF 143
            +FTCLSKT + +  +   L TD F++ L  F
Sbjct: 1291 VFTCLSKTAVHL-EVSWGLDTDSFLRALNRF 1320


>SB_27880| Best HMM Match : Activin_recp (HMM E-Value=5.1)
          Length = 415

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 250 IRQIFIFTCL--SKTCLFVNNLKSNLPTDIFIKGLQYFDC 137
           I Q   +TCL   KTCL V+    N+PT + I     + C
Sbjct: 39  IHQEHPYTCLYTPKTCLQVSVYTKNIPTRVCIHQKHAYKC 78


>SB_21| Best HMM Match : NOC3p (HMM E-Value=0.0058)
          Length = 423

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 31  IKKLNSIFFIKETVYISSNLSYKSSIKRLMIMLP 132
           + K+ +I+F+KET Y +  L   SS+  L + LP
Sbjct: 383 VNKMKNIYFMKETSYDNQTL-VTSSMTSLEVKLP 415


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,405,971
Number of Sequences: 59808
Number of extensions: 73258
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)