Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0238
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_4173| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_32630| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-25)                 28   6.0  

>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 38   YLLTNLPTMAKNIKKVYLFIYLFTIRR 118
            Y+  N+PT++ N   ++LF+YL+T+ R
Sbjct: 967  YININVPTVSSNKDYMHLFMYLYTLLR 993


>SB_4173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 743

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 100 FIYHKENQQPIRTIMLQIIEKPIK 171
           F+YH+E  +P +  M Q + KP+K
Sbjct: 36  FVYHREPSKPGQAFMKQTVGKPLK 59


>SB_32630| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-25)
          Length = 474

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 26  FLWYYLLTNLPTMAKNIKKVYLF 94
           FL Y  +TN  TM + I  VYLF
Sbjct: 104 FLMYRTITNTTTMPRQISAVYLF 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,170,957
Number of Sequences: 59808
Number of extensions: 238184
Number of successful extensions: 469
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)