Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0215
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38159| Best HMM Match : Peptidase_M28 (HMM E-Value=4.7e-09)         31   1.1  
SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)                   29   5.6  
SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  

>SB_38159| Best HMM Match : Peptidase_M28 (HMM E-Value=4.7e-09)
          Length = 1049

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -2

Query: 775 PSPLEDAQSSNEPIIAG--RSRSKP 707
           PSPLED  SSNEP+  G   +R KP
Sbjct: 366 PSPLEDEASSNEPLKGGDRNARKKP 390


>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 24/103 (23%), Positives = 48/103 (46%)
 Frame = +3

Query: 3   KNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYR 182
           KN D  F+ K  ++ S     S+ +  + ++K  +        D   N++  +E  ++ R
Sbjct: 4   KNADNGFLGKVGRLASMRTTKSKKDKHNGHHKYKERMASTREEDTVGNQELDDEIERIKR 63

Query: 183 TGFMPKNLEFSVFYDKMRDEAIALSIYSITLRTLKRSTRLPVL 311
              +P++ EFS  ++KM DE      +   +R    ST++ +L
Sbjct: 64  ---LPED-EFSKIFEKMLDEMNLSDAHKDPIRKRDMSTKMDML 102


>SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 460 VNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQELT 332
           VN +Q F    + ++   +SR+   + +R  DN D EG+ E T
Sbjct: 658 VNDIQDFAFSNNMKLNPAKSRHQAFIPLRCKDNGDREGMFEAT 700


>SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)
          Length = 304

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +3

Query: 3   KNVDAVFVEKQKKILSFFQDVSQLNTDD-EYYKIGKD---YDIEM 125
           + ++A  +EK K++L FF  +   N +D EY  I  +   Y +EM
Sbjct: 230 EEIEAFSIEKMKEVLLFFDPIDVSNMEDFEYSHINAEDIMYSLEM 274


>SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 132 PYSFRYHSLCQF-YNIHHQCLVGSHLGRRTEFSFAFQQIRHP 10
           P+S+R    C+F   +H+ CL  +H  +  EF +   +   P
Sbjct: 68  PFSYRNKVFCRFDAAVHYDCLYVTHKKKHVEFRWLHIEFLQP 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,475,093
Number of Sequences: 59808
Number of extensions: 438027
Number of successful extensions: 1085
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)