Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0205
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5200| Best HMM Match : Torsin (HMM E-Value=0)                       57   1e-08
SB_47923| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   5e-08
SB_48285| Best HMM Match : Torsin (HMM E-Value=0)                      54   1e-07
SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_40169| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_14902| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_47746| Best HMM Match : T-box (HMM E-Value=1.8e-23)                 28   5.1  

>SB_5200| Best HMM Match : Torsin (HMM E-Value=0)
          Length = 291

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 23/46 (50%), Positives = 34/46 (73%)
 Frame = +1

Query: 310 KKALVISLHGWSGVGKNFASTMIAEAIYRKGMQSNYVKLFMGKKDF 447
           +KAL +S +GW+G GKN+ S +IAE +YRKG+ S+YV + +   DF
Sbjct: 95  QKALALSFNGWTGCGKNYVSKIIAEHLYRKGIDSSYVHVMIATHDF 140



 Score = 33.9 bits (74), Expect = 0.10
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
 Frame = +2

Query: 29  IYLIMFLSSTLSEPITISLVGSAIVLASGWYKWDTLKDATYCKFTECCNDYHIPFDVQKL 208
           + +++ LS+ L++   +S V +  V+A+G           Y K TE C D  I  ++  L
Sbjct: 6   LLIVLTLSNFLAD-FVVSFVITGPVIAAGIATLFGSGGLFYYK-TEHCTDGWISPNMTGL 63

Query: 209 RDSLSQRMFGQPLVNDF---SILSQLTKRILMKAM 304
           + SL  R+FGQ LV D    ++   +T +   KA+
Sbjct: 64  KKSLDNRLFGQHLVKDIVYKAVKGHVTNKSPQKAL 98



 Score = 31.5 bits (68), Expect = 0.55
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 510 KCPKSLIIFDEIHHMCPSVLDTIIPMLDHH 599
           KC +S+ IFDE+  M   ++  + P LDH+
Sbjct: 163 KCGRSMFIFDEMDKMPEGLVGVLKPFLDHY 192


>SB_47923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 22/46 (47%), Positives = 33/46 (71%)
 Frame = +1

Query: 310 KKALVISLHGWSGVGKNFASTMIAEAIYRKGMQSNYVKLFMGKKDF 447
           +KAL +S +GW+G GK + S +IAE +YRKG+ S+YV + +   DF
Sbjct: 83  QKALALSFNGWTGCGKTYVSKIIAEHLYRKGIDSSYVHVMIATHDF 128



 Score = 31.5 bits (68), Expect = 0.55
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 510 KCPKSLIIFDEIHHMCPSVLDTIIPMLDHH 599
           KC +S+ IFDE+  M   ++  + P LDH+
Sbjct: 151 KCGRSMFIFDEMDKMPEGLVGVLKPFLDHY 180



 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 170 CNDYHIPFDVQKLRDSLSQRMFGQPLVNDF---SILSQLTKRILMKAM 304
           C D  I  ++  L+ SL  R+FGQ LV D    ++   +T +   KA+
Sbjct: 39  CTDGWISPNMTGLKKSLDNRLFGQHLVKDIVYKAVKGHVTNKSPQKAL 86


>SB_48285| Best HMM Match : Torsin (HMM E-Value=0)
          Length = 636

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 20/40 (50%), Positives = 32/40 (80%)
 Frame = +1

Query: 313 KALVISLHGWSGVGKNFASTMIAEAIYRKGMQSNYVKLFM 432
           K LV+SLHGW+G GKNFA+ +IA+ +++ G+ SN++  F+
Sbjct: 404 KPLVLSLHGWTGTGKNFATELIAQHLFKHGIHSNFIYKFI 443


>SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2051

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 300  QWEQESSSNKSPWLVRCW*KFC-LYNDCRSYLSQRHAEQLCKTI 428
            Q+EQE    K+ W++ C   FC LY +  +++  ++   + KT+
Sbjct: 1363 QYEQEDEDRKAKWVLYCLGSFCILYGE--AFVMHQYLPHMQKTV 1404


>SB_40169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 164 ECC-NDYH-IPFDVQKLRDSLSQRMFGQPLV 250
           ECC   YH  P D  K+R S+  R+FG  LV
Sbjct: 698 ECCVMSYHSTPEDTSKIRRSVKYRIFGTTLV 728


>SB_14902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +2

Query: 20  LIGIYLIMFLSSTLSEPITISLVGSAIVLASGWYKWDTLKDATYCKFTE 166
           LIG  +  +LS +LS  I  SLV SA+ L SG   W T +      F E
Sbjct: 159 LIGKIVASYLSGSLS--IISSLVDSAVDLVSGIIFWYTTRSIKTTNFYE 205


>SB_47746| Best HMM Match : T-box (HMM E-Value=1.8e-23)
          Length = 390

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +3

Query: 303 WEQESSSNKSPWLV----RCW*KFCLYNDCRSYLSQRHAEQLCKTIYG*KR 443
           W +E S N+   LV    R +      + C SYLS++H  Q  +T Y  K+
Sbjct: 40  WRKEQSKNEGKDLVKLSDRPYKDLIALDSCTSYLSRKHPTQELQTGYSIKK 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,133,978
Number of Sequences: 59808
Number of extensions: 355737
Number of successful extensions: 817
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)