Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0186
(463 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 6e-12
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 7e-10
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 7e-10
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 7e-10
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 7e-10
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 3e-09
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-06
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 5e-05
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 5.7
SB_54471| Best HMM Match : PHD (HMM E-Value=4.9e-08) 27 7.6
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0) 27 10.0
SB_4040| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.00044) 27 10.0
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 67.3 bits (157), Expect = 6e-12
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = -1
Query: 127 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
SWI RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 7e-10
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -1
Query: 112 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 7e-10
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -1
Query: 112 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 7e-10
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -1
Query: 112 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 60.5 bits (140), Expect = 7e-10
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -1
Query: 112 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 58.4 bits (135), Expect = 3e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -1
Query: 109 RTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
RT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -1
Query: 109 RTSAKAFAKGVFINQERKLEVRRRLDT 29
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 48.0 bits (109), Expect = 4e-06
Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Frame = -1
Query: 112 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
R+T+ ++ AK VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 134 VKFLDRRKTNISESICQRCFHQSRTKV 54
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.4 bits (100), Expect = 5e-05
Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = -1
Query: 112 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
R+T+ ++ + VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43
Score = 33.9 bits (74), Expect = 0.066
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -3
Query: 134 VKFLDRRKTNISESICQRCFHQSRTKV 54
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -1
Query: 112 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 131 KFLDRRKTNISESICQRCFHQSRTKV 54
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -1
Query: 112 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -3
Query: 134 VKFLDRRKTNISESICQRCFHQSRTKV 54
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -1
Query: 112 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -3
Query: 134 VKFLDRRKTNISESICQRCFHQSRTKV 54
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 195 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 85
Q EV +++ GH Y C GE++ S++D H+ +P
Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +1
Query: 196 KTNKIEPRSYSIIPCTKYSRAFLARFEHSNLFKVKLSAHL 315
K + ++ Y+ + +S+ RFEH+N ++KL+ ++
Sbjct: 725 KNHSVDKHDYNNVTPLLFSQERFERFEHNNSLEIKLTVNI 764
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 27.5 bits (58), Expect = 5.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 116 DDPRISPLTSQYEC 157
DDPR+SP + QY C
Sbjct: 241 DDPRVSPTSQQYAC 254
>SB_54471| Best HMM Match : PHD (HMM E-Value=4.9e-08)
Length = 352
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +2
Query: 308 PTSTLTEEHRDRILILNRRFLERR----LTDDMLRKRV-SITADACTDSAAHKCNY 460
PTS LT E ++I + +LE R L++D+ S D C S H Y
Sbjct: 83 PTSDLTREDEQLVVISRQAYLESRRIQALSEDLFESESDSDDGDWCATSDIHSDQY 138
>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
Length = 663
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 262 LARFEHSNLFK--VKLSAHLDTHRRAPR*DFDIEPAFFRTPAHRRYA 396
LAR+ + +F ++ AHLDT RR P D+ R RYA
Sbjct: 580 LARWYQTGVFTPFLRAHAHLDTKRREPWLFDDVYKNVIRDALRTRYA 626
>SB_4040| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.00044)
Length = 817
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 347 LILNRRFLERRLTDDMLRKRVSITADAC 430
L+ RRF+ + + D L K +SI+ D C
Sbjct: 437 LVRRRRFISKLICDKFLGKVLSISQDLC 464
>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2337
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 358 PAFFRTPAHRRYAPQTC 408
P FF TP H+ Y P C
Sbjct: 307 PYFFNTPEHQDYMPDPC 323
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,309,512
Number of Sequences: 59808
Number of extensions: 254440
Number of successful extensions: 715
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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