Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0181
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_57955| Best HMM Match : Ribosomal_L41 (HMM E-Value=5)               30   1.5  
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       30   1.5  
SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)           28   5.9  
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      28   5.9  
SB_22694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_26971| Best HMM Match : Peptidase_C5 (HMM E-Value=0.13)             27   7.9  
SB_11039| Best HMM Match : Lig_chan (HMM E-Value=1.2)                  27   7.9  

>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 133 TDMFNSSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEP-TPKDQSHSSLL 276
           T   N S T  S L   +GT   +P Q     YP  P TP+ Q+ SS L
Sbjct: 431 TSQRNRSSTNESYLRASRGTSQPYPSQSQNTAYPESPDTPQPQASSSFL 479


>SB_57955| Best HMM Match : Ribosomal_L41 (HMM E-Value=5)
          Length = 404

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +1

Query: 268 SLLFRTTNH----SVIHSIAPFFLSTSNNLTCS--SRRSWSTMKENYSPIYLTFLTIH 423
           SLL+R +NH    S+ + +    +S+S  +TCS  +   W   +    P+Y  F+  H
Sbjct: 259 SLLYRVSNHADYVSIAYRLIRAMMSSSLGVTCSPITWTIWLACRTREMPVYTAFVMQH 316


>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/76 (26%), Positives = 41/76 (53%)
 Frame = +1

Query: 277 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIR 456
           + T +  V+++++  + + S N    S +  +T+ +NYS +   +LT   + +NY+ L  
Sbjct: 76  YLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLT---LSKNYSTL-- 130

Query: 457 KSKRTLTITVYNSRIS 504
            SK  LT++   S +S
Sbjct: 131 -SKNYLTLSKNYSTLS 145



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/68 (22%), Positives = 38/68 (55%)
 Frame = +1

Query: 235 YEPTPKDQSHSSLLFRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFL 414
           Y    K+    S  + T +  ++++++  +L+ S  L  +  ++ ST+++NYS +   +L
Sbjct: 141 YSTLSKNYLTLSKNYLTLSIKLLNTLSKNYLTLSIKLLNTLSKNSSTLRKNYSTLSRNYL 200

Query: 415 TIHQIKRN 438
           T+ +I ++
Sbjct: 201 TLRRIPQH 208



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
 Frame = +1

Query: 235 YEPTPKDQSHSSLLFRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFL 414
           Y    K+ S  S  + T + + + +++  +L+ S N    S +  +T+ +NYS +   +L
Sbjct: 41  YLTLSKNYSTLSKNYLTLSKNYL-TLSKNYLTLSKNYLTLSIKVLNTLSKNYSTLSKNYL 99

Query: 415 T-----IHQIKRNYNALIRKSKRTLTITVYNSRIS 504
           T     ++ + +NY+ L   SK  LT++   S +S
Sbjct: 100 TLSIKVLNTLSKNYSTL---SKNYLTLSKNYSTLS 131


>SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)
          Length = 355

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 295 SVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIR-KSKRT 471
           S+    AP  L+T+NN TC+ R+  +       PI + +L  H  K+    L   + K T
Sbjct: 19  SITTEDAPTSLATANNNTCNCRQK-NACPRKLPPI-ICYLPSHCNKKGQQHLRNLRKKAT 76

Query: 472 LTITVYN 492
            T+  YN
Sbjct: 77  ATMWHYN 83


>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
 Frame = +1

Query: 235 YEPTPKDQSHSSLLFRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFL 414
           Y    K+ S  S  + T + + + +++  +L+ S N    S +  +T+ +NYS +   +L
Sbjct: 41  YLTLSKNYSTLSKNYLTLSKNYL-TLSKNYLTLSKNYLTLSIKVLNTLSKNYSTLSKNYL 99

Query: 415 T-----IHQIKRNYNALIRKSKRTLTITVYNSRIS 504
           T     ++ + +NY+ L   SK  LT++   S +S
Sbjct: 100 TLSIKVLNTLSKNYSTL---SKNYLTLSKNYSTLS 131


>SB_22694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 374 VDQDLLEEHVRLFEVLRKNGAIEWITEWFVVRNNR 270
           + Q LL+ +    E   K G  EW+TEW ++ N R
Sbjct: 77  LQQLLLQFYAVNKEKKTKKGPKEWLTEWVILFNRR 111


>SB_26971| Best HMM Match : Peptidase_C5 (HMM E-Value=0.13)
          Length = 553

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 333 FKQPNMFFKKVLVYHEGELFPY 398
           FKQ N++   VLV  +G+L+PY
Sbjct: 99  FKQVNVWVNGVLVKAQGDLYPY 120


>SB_11039| Best HMM Match : Lig_chan (HMM E-Value=1.2)
          Length = 116

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 285 NKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGELFPYLFNIPHYTP 425
           N  F +  DRP+L    +QP    K  ++   G  + Y F +P  +P
Sbjct: 24  NSNFAFISDRPILEYIARQPEYCGKLKVIGGFGSTYGYGFALPLNSP 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,866,025
Number of Sequences: 59808
Number of extensions: 357028
Number of successful extensions: 983
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)