Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0162
         (554 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   3e-12
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)                 63   1e-10
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   2e-07
SB_58281| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05)          30   1.1  
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)                    29   2.6  
SB_57470| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_36990| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 33/43 (76%), Positives = 36/43 (83%)
 Frame = -1

Query: 485 SPTYATPLMSPYNARLESSLTGSSFPDDSPKPVPLAVVSLDSR 357
           +PTY+TPLMS +  RLESS TGSSFP D  KPVPLAVVSLDSR
Sbjct: 88  TPTYSTPLMSFHRVRLESSSTGSSFPADCAKPVPLAVVSLDSR 130


>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
          Length = 521

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = -2

Query: 226 HSEHWAEITLRQHPRGPSQCFVLIRQSDSPCPCQF 122
           ++EHWAEITLRQH   PSQCFVLI+QSDSP  CQF
Sbjct: 48  NNEHWAEITLRQHRFRPSQCFVLIKQSDSPSHCQF 82


>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/27 (81%), Positives = 23/27 (85%)
 Frame = +2

Query: 296 MPRHLISDAHEWINEIPTVPIYYLAKP 376
           MPRHLISDAHEWINEIPTVPI    +P
Sbjct: 1   MPRHLISDAHEWINEIPTVPIIEFLQP 27


>SB_58281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +3

Query: 120 QNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAVN-GGSNYDSLKVAK 296
           +N++G+  + CL  +   D  +GC R+++    +   R  +  + +N G +NYD++ + +
Sbjct: 530 ENYNGEDGAPCLFPSNWIDASQGCYRSLVFHAFASSLRHFLARALMNEGHTNYDAMTLVQ 589

Query: 297 CLV 305
            +V
Sbjct: 590 EIV 592


>SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05)
          Length = 909

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 513 GFQRRSRETISHLCYTSHVSLQCQTRVKLNRV 418
           GFQ +S +TI+HL Y   + +   +  KL RV
Sbjct: 114 GFQNQSDQTITHLLYIDDLKMYASSEEKLARV 145


>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/19 (73%), Positives = 14/19 (73%)
 Frame = +1

Query: 211 PSALNVNVKKFKQAR*TAG 267
           PSALNV VKKF QAR   G
Sbjct: 31  PSALNVKVKKFNQARVNGG 49


>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
          Length = 1120

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 141 ESDCLIKTKHCDGPRGC*RNVISAQCSE 224
           E DC+  +KHCDG   C        C E
Sbjct: 73  EGDCIPLSKHCDGTWDCQHGTDEMDCQE 100


>SB_57470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 500 DRAKRSPTYATPLMSPYNARLESSLTGSSFPDDSP 396
           D    SPT  TP   P +  ++S ++GSS  + +P
Sbjct: 3   DSGAHSPTCQTPSTPPRSLEIDSDMSGSSMGERTP 37


>SB_36990| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 94  QNRADRARNETDTTLRLGRSAEGRRTRVR 8
           +NRA RA  +    L+  R  EGRRTR R
Sbjct: 52  ENRALRAHRKCGIILQAFRKFEGRRTRTR 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,336,515
Number of Sequences: 59808
Number of extensions: 401390
Number of successful extensions: 947
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)