Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0141
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   7e-04
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.045
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          28   5.1  
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   6.8  
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_55246| Best HMM Match : DUF1168 (HMM E-Value=0.32)                  27   9.0  
SB_39853| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.0  
SB_19278| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.0  
SB_52098| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.0  
SB_28647| Best HMM Match : Ribosomal_L36 (HMM E-Value=1)               27   9.0  
SB_20001| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = -1

Query: 397 DVVAVSQAPSPESNPDSPLPVTTM 326
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = -1

Query: 388 AVSQAPSPESNPDSPLPVTTM 326
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -2

Query: 387 PFLRLPLRNRTLIPRYP 337
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 508 NILTRNNWRASLXXXXXXXXXXXXYTKIVAVKKL 609
           +++ R +WRASL            Y K+VAVKKL
Sbjct: 57  HLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKL 90


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/64 (21%), Positives = 30/64 (46%)
 Frame = -1

Query: 367  PESNPDSPLPVTTMVVAETTIES**GRHLKDASPVGDQRSAKVIQIHQN*RLRTRGPPSI 188
            P  N D    +  ++ ++T +     ++   ++P GD+   KV   H N +    GPP++
Sbjct: 2018 PSFNDDED--ILDLIGSDTDLSDAESQNSLSSAPTGDEDGIKVGSYHHNTKQSYPGPPAV 2075

Query: 187  GFDL 176
              ++
Sbjct: 2076 AMNI 2079


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 406 PSLDVVAVSQAPSPESNPDSPLP 338
           P+ DV+A  Q P P S  D PLP
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLP 97


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 520 RNNWRASLXXXXXXXXXXXXYTKIVAVKKL 609
           R +WRASL            Y K+VAVKKL
Sbjct: 14  RIHWRASLVPAAAVIPAPIAYIKVVAVKKL 43


>SB_55246| Best HMM Match : DUF1168 (HMM E-Value=0.32)
          Length = 943

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +2

Query: 398 QGRQQARK--LPTPGTGGSDEK*RYGTLTRPRNRN 496
           QGR + RK  L  PG GGSD K R     +   RN
Sbjct: 136 QGRDEVRKAILDIPGEGGSDMKSRLQREVQEARRN 170


>SB_39853| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 254

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 273 RRRWVTSDLQKLSRFIKINDFGREALRRLV 184
           R +W+  DL KLS+ +K+   GR+ L + V
Sbjct: 214 RLQWLQVDLGKLSKVVKVATQGRQDLNQWV 243


>SB_19278| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 303

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 273 RRRWVTSDLQKLSRFIKINDFGREALRRLV 184
           R +W+  DL KLS+ +K+   GR+ L + V
Sbjct: 208 RLQWLQVDLGKLSKVVKVATQGRQDLNQWV 237


>SB_52098| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 308

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 273 RRRWVTSDLQKLSRFIKINDFGREALRRLV 184
           R +W+  DL KLS+ +K+   GR+ L + V
Sbjct: 260 RLQWLQVDLGKLSKVVKVATQGRQDLNQWV 289


>SB_28647| Best HMM Match : Ribosomal_L36 (HMM E-Value=1)
          Length = 812

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 404 RQQARKLPTPGTGGSDEK*RYGTLTRPRNRNEYTLIF*RGTIGGQ 538
           RQ  R+ P+  TGG+  + R  T++  R + +Y     RG+I  Q
Sbjct: 188 RQDKRQYPSAKTGGNIHQQRQETVSISRGKRQYPSTETRGSIHQQ 232


>SB_20001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 273 RRRWVTSDLQKLSRFIKINDFGREALRRLV 184
           R +W+  DL KLS+ +K+   GR+ L + V
Sbjct: 413 RLQWLQVDLGKLSKVVKVATQGRQDLNQWV 442



 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 273 RRRWVTSDLQKLSRFIKINDFGREALRRLV 184
           R +W+  DL KLS+ +K+   GR+ L + V
Sbjct: 674 RLQWLQVDLGKLSKVVKVATQGRQDLNQWV 703


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,881,447
Number of Sequences: 59808
Number of extensions: 406925
Number of successful extensions: 1053
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)