Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0122
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   2e-04
SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.13 
SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)           31   0.67 
SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.89 
SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)            30   1.2  
SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)                  27   6.3  
SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)                  27   6.3  
SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041)                   27   8.3  

>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 38

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 20/29 (68%), Positives = 21/29 (72%)
 Frame = -2

Query: 249 NRYGPPSGFPLTST*PGIVHHLSGPSICA 163
           NRY PP  FPL S   GIVHHLSGP+ CA
Sbjct: 1   NRYEPPPEFPLASPYSGIVHHLSGPNRCA 29


>SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = -1

Query: 250 ESLRSSIRVSPDFDLTRHSSPSFGSQHLCS 161
           ESLR+S RVS  F L RHSSPSFGSQ + S
Sbjct: 35  ESLRASTRVSSGFTLFRHSSPSFGSQQMRS 64


>SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = -2

Query: 249 NRYGPPSGFPLTST*PGIVHH 187
           NRY PP  FPL S   GIVHH
Sbjct: 1   NRYEPPPEFPLASPYSGIVHH 21


>SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)
          Length = 308

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 169 NAGTRKMVNYAWSGRSQGKP*WRTVAILTANRSSE 273
           NA  RK + + W       P WRTV ++ AN + E
Sbjct: 75  NAARRKEIRFTWGTDFLPSPRWRTVFLIGANDNQE 109


>SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 169 NAGTRKMVNYAWSGRSQGKP*WRTVAILTANRSSE 273
           NA  RK + + W       P WRTV ++ AN + E
Sbjct: 79  NAARRKEIRFTWGTDFLPTPRWRTVFLIGANDNQE 113


>SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)
          Length = 703

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 156 RSEHKCWDPKD--GELCLVRSKSGETLMEDRSDSDCKSIVGTGYRGERLIEPSSSWFRPK 329
           +++  C D ++  GE     +KS +T   D S + C+S++ TG   + L +   S  RP+
Sbjct: 303 QNDLSCSDSENEGGESFSTTAKSKDTKANDYSMTSCRSVLATGLNEQSLAKRKESIRRPE 362


>SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)
          Length = 307

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 195 VHHLSGPSICAQSAPSFTDWKRDASGVRKSR 103
           V  L+  S+C Q APSF + K+ AS VR ++
Sbjct: 183 VRKLAKISLCDQYAPSFKEKKKMASEVRVAK 213


>SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)
          Length = 834

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 168 KCWDPKDGELCLVRSKSGETLMEDRS-DSDCKSIVGTGYRG 287
           K WD +    C++  K  E  + D   DSDCK ++ T   G
Sbjct: 157 KVWDSRT-VACVMEMKENEDFISDMECDSDCKLLLATSGDG 196


>SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041)
          Length = 128

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = +3

Query: 117 LPRRLVSNQ*MKARSEHKC----WDPKDGELCLVRSKSGETLMEDRSDSD 254
           L RR VSN   + +++H+     +  +DG+   V++K G++L++   D+D
Sbjct: 29  LARRYVSNGKEQTKAKHETVSITFVDRDGDRQTVKAKVGDSLLDVAKDND 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,395,496
Number of Sequences: 59808
Number of extensions: 301510
Number of successful extensions: 633
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)