Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0114
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)                   28   5.1  
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)          28   6.7  
SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)             27   8.8  
SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  

>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 401  HTPSSV*NFTAKPRGSRTVSADPLSPPTVENLTAIGVLLP 282
            +TPS     TA PR SR  +    S PT + LTA   +LP
Sbjct: 2119 YTPSCPDTLTATPRVSRHANRYAPSVPTHDTLTATPRVLP 2158


>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
          Length = 1088

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 295 PIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDL 408
           P+AV+  T+  + G    ++   G  V  Y D+G W+L
Sbjct: 127 PLAVKLGTITPDGGGNSYLQCDTGLWVVAYGDEGQWNL 164


>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
          Length = 1211

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 420 YSHFLYKRSNIIPEFYPY-SEENPATHLKDPTCFGTF*P*DQRPSINFFT 566
           ++H L   ++  P  +P  S+  PATHL    CF TF     +P   F T
Sbjct: 659 FNHALLHTTHPSPATHPSPSQPCPATHLSPKPCF-TFVTLSPKPCFTFLT 707


>SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)
          Length = 839

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -3

Query: 590 IRNPRSPTCKEVDGWSLVLRSKSPKTCRIF---QMCCRVLF*VWIKLGNNVGSLIKKMG 423
           +R  R    K +D W  V++ +SPK  RI      CC++ +    +L  N GS +  +G
Sbjct: 612 VREKRQVKAKIMDDWYSVVKLESPKGNRIVCHGVFCCKLEY----ELQENYGSELYALG 666


>SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +2

Query: 29  TLKDSPGFITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAK 205
           T KD+ GF      A  G +  +QT+ + G   L+D  +LD+  ++    +   V H +
Sbjct: 251 TAKDNDGFTAFHLAAREGEEEVLQTLLRTG-VTLKDTVYLDDTDNYGNTCLHLAVKHGR 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,960,614
Number of Sequences: 59808
Number of extensions: 436595
Number of successful extensions: 997
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)