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Last updated: 2019/10/06
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0092
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   9e-09
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   3e-07
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)                     47   2e-05
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)                 36   0.033
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)                     29   2.9  
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)                     29   2.9  
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)                     29   2.9  
SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)                 28   8.8  
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                28   8.8  
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)                    28   8.8  
SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4)                28   8.8  
SB_36990| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)                 28   8.8  
SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)                   28   8.8  
SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6)                28   8.8  
SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8)                 28   8.8  

>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
 Frame = -1

Query: 633 PPNRVSNETMKVVVFQRR-SRETISHLCYTSHVSLQCQTRVKLTGSSFPADSPKPVPLAV 457
           P +R+S +T++VVVF RR +  T S    + H   + +     TGSSFPAD  KPVPLAV
Sbjct: 68  PLHRISKKTIRVVVFHRRIATPTYSTPLMSFH---RVRLESSSTGSSFPADCAKPVPLAV 124

Query: 456 VSLDSR 439
           VSLDSR
Sbjct: 125 VSLDSR 130


>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 22/27 (81%), Positives = 23/27 (85%)
 Frame = +3

Query: 378 MPRHLISDAHEWINEIPTVPIYYLAKP 458
           MPRHLISDAHEWINEIPTVPI    +P
Sbjct: 1   MPRHLISDAHEWINEIPTVPIIEFLQP 27


>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
          Length = 167

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +1

Query: 295 SALNVNVKKFKQARVNGGSNYDSL 366
           +ALNV VKKF QARVNGGSNYDSL
Sbjct: 28  AALNVKVKKFNQARVNGGSNYDSL 51


>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 20/23 (86%), Positives = 20/23 (86%)
 Frame = +1

Query: 298 ALNVNVKKFKQARVNGGSNYDSL 366
           ALNV VKKF QARVNG SNYDSL
Sbjct: 2   ALNVKVKKFNQARVNGWSNYDSL 24


>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 18/24 (75%), Positives = 19/24 (79%)
 Frame = +1

Query: 292 PSALNVNVKKFKQARVNGGSNYDS 363
           PSALNV VKKF QARVNGG   +S
Sbjct: 31  PSALNVKVKKFNQARVNGGDPLES 54


>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
          Length = 521

 Score = 35.9 bits (79), Expect = 0.033
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = -2

Query: 263 RAIQCFVLIRQSDSPCPCQF 204
           R  QCFVLI+QSDSP  CQF
Sbjct: 63  RPSQCFVLIKQSDSPSHCQF 82



 Score = 32.3 bits (70), Expect = 0.41
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -3

Query: 307 HSEHWAEITLRQHPRGPS 254
           ++EHWAEITLRQH   PS
Sbjct: 48  NNEHWAEITLRQHRFRPS 65


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 25/87 (28%), Positives = 37/87 (42%)
 Frame = -1

Query: 681  GTKHRAPADIIDRAPFPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQCQTRVKLTG 502
            G +H AP  IID  P   +++   T KV V++  ++ T  H    S  S Q  +  + T 
Sbjct: 747  GFEHNAPQPIIDEGP-DTSQLRPRTSKVAVWE-TAQATTQHSESVSETSPQLSSTAQQTP 804

Query: 501  SSFPADSPKPVPLAVVSLDSR*GQWES 421
               PA        +  SL +R   W S
Sbjct: 805  PHSPATRHNARTSSPQSLATRHNAWTS 831


>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 199  LTVERRSYRIVPIAHETKPTRPYG*EDPRKA-GERGSGSSPKRKT 68
            L+V  R Y++VP++HE          + R A   +GSGSSP R T
Sbjct: 1038 LSVSGRCYKVVPLSHELCLVSKSLWNNRRSADNPKGSGSSPTRDT 1082


>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
 Frame = +1

Query: 58  SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
           ++ SSY  +WI   V     D+P R + +S +F   S     TA+Q   +    Q  +  
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS-----TAIQELFKRISEQFTAMF 389

Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
             K   HW    G+D M F  +  N+N  V +++Q
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424


>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 391

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
 Frame = +1

Query: 58  SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
           ++ SSY  +WI   V     D+P R + +S +F   S     TA+Q   +    Q  +  
Sbjct: 280 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS-----TAIQELFKRISEQFTAMF 334

Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
             K   HW    G+D M F  +  N+N  V +++Q
Sbjct: 335 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 369


>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
 Frame = +1

Query: 58  SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
           ++ SSY  +WI   V     D+P R + +S +F   S     TA+Q   +    Q  +  
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS-----TAIQELFKRISEQFTAMF 389

Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
             K   HW    G+D M F  +  N+N  V +++Q
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424


>SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
          Length = 732

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 555 ISGRSFRAIVAEKPLLSLFH 614
           + GR F  I   KPLLSLFH
Sbjct: 374 VFGRDFDIITDHKPLLSLFH 393


>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1829

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 555  ISGRSFRAIVAEKPLLSLFH 614
            + GR F  I   KPLLSLFH
Sbjct: 1317 VFGRDFDIITDHKPLLSLFH 1336


>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 555 ISGRSFRAIVAEKPLLSLFH 614
           + GR F  I   KPLLSLFH
Sbjct: 79  VFGRDFDIITDHKPLLSLFH 98


>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
          Length = 1280

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 555 ISGRSFRAIVAEKPLLSLFH 614
           + GR F  I   KPLLSLFH
Sbjct: 608 VFGRDFDIITDHKPLLSLFH 627


>SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4)
          Length = 300

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 555 ISGRSFRAIVAEKPLLSLFH 614
           + GR F  I   KPLLSLFH
Sbjct: 259 VFGRDFDIITDHKPLLSLFH 278


>SB_36990| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 176 QNRADRARNETDTTLRLGRSAEGRRTRVR 90
           +NRA RA  +    L+  R  EGRRTR R
Sbjct: 52  ENRALRAHRKCGIILQAFRKFEGRRTRTR 80


>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 555 ISGRSFRAIVAEKPLLSLFH 614
           + GR F  I   KPLLSLFH
Sbjct: 568 VFGRDFDIITDHKPLLSLFH 587


>SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
          Length = 429

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 555 ISGRSFRAIVAEKPLLSLFH 614
           + GR F  I   KPLLSLFH
Sbjct: 347 VFGRDFDIITDHKPLLSLFH 366


>SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 555 ISGRSFRAIVAEKPLLSLFH 614
           + GR F  I   KPLLSLFH
Sbjct: 167 VFGRDFDIITDHKPLLSLFH 186


>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
          Length = 1544

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 555 ISGRSFRAIVAEKPLLSLFH 614
           + GR F  I   KPLLSLFH
Sbjct: 773 VFGRDFDIITDHKPLLSLFH 792


>SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6)
          Length = 309

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 555 ISGRSFRAIVAEKPLLSLFH 614
           + GR F  I   KPLLSLFH
Sbjct: 167 VFGRDFDIITDHKPLLSLFH 186


>SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 555 ISGRSFRAIVAEKPLLSLFH 614
           + GR F  I   KPLLSLFH
Sbjct: 608 VFGRDFDIITDHKPLLSLFH 627


>SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8)
          Length = 391

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 555 ISGRSFRAIVAEKPLLSLFH 614
           + GR F  I   KPLLSLFH
Sbjct: 241 VFGRDFDIITDHKPLLSLFH 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,656,249
Number of Sequences: 59808
Number of extensions: 512905
Number of successful extensions: 1197
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

The construction of this database has been supported by
Grant-in-Aid for Publication of Scientific Research Results,
JSPS, Japan (1999-2003, 2005-2018).

The EST sequencing was supported by the Genome Analysis Program,National Bioresource Project (NBRP),
Grants-in-Aid for Scientific Research, MEXT,and the Agrigenome Program, NIAS/MAFF.
The maintenance and distribution of the DNA clones are supported by the National Bioresource Project (NBRP).