Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0071
(637 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19053| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 9e-07
SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_52007| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_40315| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_32500| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_24543| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_20448| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_9493| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_5288| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_4968| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_3995| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_1350| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_59236| Best HMM Match : Attractin (HMM E-Value=8.2) 45 6e-05
SB_53668| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_53194| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_47973| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_40285| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_16426| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_15603| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_19187| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 8e-05
SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_161| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_11440| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_40592| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_9995| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_24609| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.036
SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041) 31 0.78
SB_6844| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1) 30 1.4
SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4) 29 4.2
SB_47253| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_40022| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_28768| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_17596| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_15711| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_13940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_3184| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_57385| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_54119| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_52963| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_50350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_34064| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_31920| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_28366| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8) 29 4.2
SB_25308| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_24745| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_2618| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_46879| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_41433| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.6e-07) 27 9.7
>SB_19053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 50.8 bits (116), Expect = 9e-07
Identities = 25/42 (59%), Positives = 29/42 (69%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGFIVRVSRSSHPFKV 169
LN FGSS ASSAYQ WPT + H +SGF SR+S+ FKV
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGFNY-ASRTSYQFKV 57
>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/29 (68%), Positives = 21/29 (72%)
Frame = +1
Query: 355 NRYGPPSGFPLTST*PGIVHHLSGPSICA 441
NRY PP FPL S GIVHHLSGP+ CA
Sbjct: 1 NRYEPPPEFPLASPYSGIVHHLSGPNRCA 29
>SB_52007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 57 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 85
>SB_40315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 54 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 82
>SB_32500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_24543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_20448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 55 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 83
>SB_9493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 55 LNRAFGSSRIASSAYQKWPTSNSHSLSGF 83
>SB_5288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_4968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_3995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTKNSHSLSGF 45
>SB_1350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_59236| Best HMM Match : Attractin (HMM E-Value=8.2)
Length = 125
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 96 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 124
>SB_53668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_53194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_47973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_40285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_16426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_15603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 139 LNRAFGSSRIASSAYQKWPTRNSHSLSGF 167
>SB_19187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNHAFGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 44.0 bits (99), Expect = 1e-04
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +3
Query: 354 ESLRSSIRVSPDFDLTRHSSPSFGSQHLCSERAFIH*LETRRLGSAKSRT-XXXXXXXXX 530
ESLR+S RVS F L RHSSPSFGSQ + R++ + L R+G + R
Sbjct: 35 ESLRASTRVSSGFTLFRHSSPSFGSQQM---RSYSN-LSKSRIGRSMMRLFFVEKGSHLS 90
Query: 531 ERRAFAFTFVTPFSLMLKIYKTHDSHTC 614
+R F + + F + DSHTC
Sbjct: 91 DRSRLHFHYASEFRSL------KDSHTC 112
>SB_161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN +GSS ASSAYQ WPT + H +SGF
Sbjct: 17 LNRAYGSSRIASSAYQKWPTRNSHSLSGF 45
>SB_11440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSA Q WPT + H +SGF
Sbjct: 74 LNRAFGSSRIASSALQKWPTRNSHSLSGF 102
>SB_40592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQISGF 130
LN FGSS ASSAYQ PT + H +SGF
Sbjct: 17 LNRAFGSSRIASSAYQKGPTRNSHSLSGF 45
>SB_9995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPTWHRHQI 121
LN FGSS ASSAYQ WPT + H +
Sbjct: 17 LNRAFGSSRIASSAYQKWPTRNSHSL 42
>SB_24609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 35.5 bits (78), Expect = 0.036
Identities = 15/20 (75%), Positives = 15/20 (75%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWPT 103
LN FGSS ASSAYQ WPT
Sbjct: 17 LNRAFGSSRIASSAYQKWPT 36
>SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +1
Query: 355 NRYGPPSGFPLTST*PGIVHH 417
NRY PP FPL S GIVHH
Sbjct: 1 NRYEPPPEFPLASPYSGIVHH 21
>SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +2
Query: 305 ISLSPLYPVPTIDLHVR 355
ISLSPLYP TIDLHVR
Sbjct: 38 ISLSPLYPNLTIDLHVR 54
>SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041)
Length = 128
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = -1
Query: 529 LREDEIISYVRDFALPRRLVSNQ*MKARSEHKC----WDPKDGELCLVRSKSGETLMEDR 362
L + + S L RR VSN + +++H+ + +DG+ V++K G++L++
Sbjct: 15 LSQQRLASRASASILARRYVSNGKEQTKAKHETVSITFVDRDGDRQTVKAKVGDSLLDVA 74
Query: 361 SDSDVQID 338
D+DV ++
Sbjct: 75 KDNDVDLE 82
>SB_6844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +2
Query: 44 LNTTFGSSHSASSAYQNWP 100
LN FGSS ASSAYQN P
Sbjct: 17 LNRAFGSSRIASSAYQNGP 35
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +3
Query: 3 PTPFMVSHERFLGALTLRLVHPTAPVLLTKIGPLGTVIRSPAS 131
PTPF+ S ER L L + GPLGT I PAS
Sbjct: 3 PTPFVGSDERRLWHLNRAFGSSRIASSAYQNGPLGTRIHCPAS 45
>SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1)
Length = 276
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +2
Query: 56 FGSSHSASSAYQNWPTWHRHQISGF 130
FGSS ASS YQN PT R GF
Sbjct: 78 FGSSRIASSGYQNGPTRTRIHCPGF 102
Score = 29.9 bits (64), Expect = 1.8
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = +3
Query: 3 PTPFMVSHERFLGALTLRLVHPTAPVLLTKI-------GPLGTVIRSPASSFE*AGVLTH 161
PTPF+ S ER RL HP ++I GP T I P + + G+LT+
Sbjct: 60 PTPFVGSDER-------RLWHPYRAFGSSRIASSGYQNGPTRTRIHCPGFNKQ-VGLLTN 111
Query: 162 LKFENR 179
LKFENR
Sbjct: 112 LKFENR 117
>SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4)
Length = 402
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 261 TRTHVRLLGPCF 272
>SB_47253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 31 TRTHVRLLGPCF 42
>SB_40022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 31 TRTHVRLLGPCF 42
>SB_28768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 31 TRTHVRLLGPCF 42
>SB_17596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 31 TRTHVRLLGPCF 42
>SB_15711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 31 TRTHVRLLGPCF 42
>SB_13940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 31 TRTHVRLLGPCF 42
>SB_3184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 31 TRTHVRLLGPCF 42
>SB_57385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 31 TRTHVRLLGPCF 42
>SB_54119| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 31 TRTHVRLLGPCF 42
>SB_52963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 31 TRTHVRLLGPCF 42
>SB_50350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 31 TRTHVRLLGPCF 42
>SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 155 TRTHVRLLGPCF 166
>SB_34064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 355 TRTHVRLLGPCF 366
>SB_31920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 31 TRTHVRLLGPCF 42
>SB_28366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 31 TRTHVRLLGPCF 42
>SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8)
Length = 411
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 274 TRTHVRLLGPCF 285
>SB_25308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 31 TRTHVRLLGPCF 42
>SB_24745| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 31 TRTHVRLLGPCF 42
>SB_2618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 601 TRTHARLLGPCY 636
TRTH RLLGPC+
Sbjct: 31 TRTHVRLLGPCF 42
>SB_46879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -1
Query: 586 IFNIKLKGVTKVKANARRSLREDEIISYVRDFALPRRL-VSNQ*MKARSEHKCWDPKDGE 410
+F L G R L++D + F PR +S++ + + +++CW GE
Sbjct: 172 LFGSHLLGERLFSMTGRNVLQQDGSTDFNCTFCKPRIYDISSEALTSVPKYRCWKYIGGE 231
Query: 409 LCLVRSKS 386
+ +R+K+
Sbjct: 232 IAELRAKA 239
>SB_41433| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.6e-07)
Length = 175
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 33 FLGALTLRLVHPTAPVLLTKIGPLGTV 113
FL A T ++ H T P +T I P+G V
Sbjct: 144 FLNAKTAKMHHVTTPNQMTLIAPMGVV 170
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,117,674
Number of Sequences: 59808
Number of extensions: 427074
Number of successful extensions: 985
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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