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Last updated: 2019/10/06
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0012
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40143| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-09)                 27   7.4  
SB_52619| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_40143| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-09)
          Length = 334

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 250 LRIIFKLKFYNNFIKKEIYIIYIVNKFYFIINYFS 354
           L  +F++  +  F+    Y+I+  + F F +NYFS
Sbjct: 72  LNCLFRVIAFLRFLLSVRYLIHAFDVFVFSLNYFS 106


>SB_52619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 492

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 280 NNFIKKEIYIIYIVNKFYFIINYFSNR 360
           +N I+     +Y+ N FY++I++F N+
Sbjct: 434 HNLIQPSYQSLYMHNSFYYLISHFWNQ 460


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,765,836
Number of Sequences: 59808
Number of extensions: 40914
Number of successful extensions: 45
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

The construction of this database has been supported by
Grant-in-Aid for Publication of Scientific Research Results,
JSPS, Japan (1999-2003, 2005-2018).

The EST sequencing was supported by the Genome Analysis Program,National Bioresource Project (NBRP),
Grants-in-Aid for Scientific Research, MEXT,and the Agrigenome Program, NIAS/MAFF.
The maintenance and distribution of the DNA clones are supported by the National Bioresource Project (NBRP).