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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0002
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   3e-11
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               59   3e-09
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               59   3e-09
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               47   2e-05
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   2e-04
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   0.001
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.025
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   5.0  
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 31/40 (77%), Positives = 34/40 (85%)
 Frame = +3

Query: 567 SWIVARRTSAKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
           SWI  RRT+AKAFAK VFINQERKLE R+R DT LVLT+N
Sbjct: 4   SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 28/35 (80%), Positives = 31/35 (88%)
 Frame = +3

Query: 582 RRTSAKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
           RRT+AKAFAK VFINQERKLE R+R DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 28/35 (80%), Positives = 31/35 (88%)
 Frame = +3

Query: 582 RRTSAKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
           RRT+AKAFAK VFINQERKLE R+R DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 28/35 (80%), Positives = 31/35 (88%)
 Frame = +3

Query: 582 RRTSAKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
           RRT+AKAFAK VFINQERKLE R+R DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 28/35 (80%), Positives = 31/35 (88%)
 Frame = +3

Query: 582 RRTSAKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
           RRT+AKAFAK VFINQERKLE R+R DT LVLT+N
Sbjct: 11  RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +3

Query: 585 RTSAKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
           RT+AKAFAK VFINQERKLE R+R DT LVLT+N
Sbjct: 29  RTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = +3

Query: 585 RTSAKAFAKGVFINQERKLEVRKRLDT 665
           RT+AKAFAK VFINQERKLE R+R DT
Sbjct: 2   RTTAKAFAKNVFINQERKLEDRRRSDT 28


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 23/36 (63%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
 Frame = +3

Query: 582 RRTS-AKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
           R+T+  ++ AK VFINQERKLE R+R DT LVLT+N
Sbjct: 8   RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 560 VKFLDRRKTNISESICQRCFHQSRTKV 640
           VKFLD RKTN  ESI +  F     K+
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERKL 28


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/36 (58%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
 Frame = +3

Query: 582 RRTS-AKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
           R+T+  ++  + VFINQERKLE R+R DT LVLT+N
Sbjct: 8   RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +2

Query: 560 VKFLDRRKTNISESICQRCFHQSRTKV 640
           VKFLD RKTN  ESICQ  F     K+
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERKL 28


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = +3

Query: 582 RRTS-AKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
           R+T+  ++  +  FINQERKLE R+R DT LVLT+N
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 563 KFLDRRKTNISESICQRCFHQSRTKV 640
           + L  RKTN  ESICQ CF     K+
Sbjct: 3   EILGFRKTNYCESICQECFINQERKL 28


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = +3

Query: 582 RRTS-AKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
           R+T+  ++  +  FINQERKLE R+R DT LVLT+N
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = +2

Query: 560 VKFLDRRKTNISESICQRCFHQSRTKV 640
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = +3

Query: 582 RRTS-AKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
           R+T+  ++  +  FINQERKLE R+R DT LVLT+N
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = +2

Query: 560 VKFLDRRKTNISESICQRCFHQSRTKV 640
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +1

Query: 94  TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAF 246
           T  +   R    ++++ R +WRASL            Y K+VAVKKLVV F
Sbjct: 44  TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGF 94


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = +1

Query: 145 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAF 246
           R +WRASL            Y K+VAVKKLVV F
Sbjct: 14  RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGF 47


>SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 569 RISPLTSQYECPQLSLLIITWSSENQQNRTEIIFYYSMHEIFK 441
           R  PL   + C Q+S    TW +E    R +  FY+ + +IF+
Sbjct: 73  RNRPLRQVWNCLQVSA---TWINEQYSTRKKYFFYFYLSQIFR 112


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 243 CNYELFNRNNFSIRYWSWNYRGCWH 169
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +1

Query: 157 RASLXXXXXXXXXXXXYTKIVAVKKLVVAF 246
           RASL            Y K+VAVKKLVV F
Sbjct: 5   RASLVPAAAVIPAPIAYIKVVAVKKLVVGF 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,807,759
Number of Sequences: 59808
Number of extensions: 448325
Number of successful extensions: 1180
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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