Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20107
         (526 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          102   2e-22
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             101   3e-22
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 71   6e-13
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   0.44 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     29   3.1  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              28   4.1  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              28   4.1  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)                  28   5.4  
SB_36351| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08)           27   9.5  
SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)                    27   9.5  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  102 bits (244), Expect = 2e-22
 Identities = 46/88 (52%), Positives = 61/88 (69%)
 Frame = +2

Query: 5   YVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGV 184
           + T++DAPGH+ F+ NMI+G +QAD  VL+  A  GEFE G  + GQTREHA+LA T GV
Sbjct: 223 HFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGV 282

Query: 185 KQLIVGVNKMDSTEPPYXEPRFEESRRK 268
           K L++ VNKMD     + E R+EE + K
Sbjct: 283 KHLVILVNKMDDPTVKWNEERYEEIKVK 310


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  101 bits (243), Expect = 3e-22
 Identities = 45/70 (64%), Positives = 56/70 (80%)
 Frame = +2

Query: 8   VTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGVK 187
           +T++DAPGH+DFI NMITG +QAD A+L+  A TGEFEAG    GQTREHA+L  +LGV 
Sbjct: 15  ITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVT 74

Query: 188 QLIVGVNKMD 217
           QLIV +NK+D
Sbjct: 75  QLIVAINKLD 84


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 34/62 (54%), Positives = 42/62 (67%), Gaps = 6/62 (9%)
 Frame = +1

Query: 346 NMLEPSTKMPWFKGWQVER------KEGKADGKXLIEALDAILPPARPTDKPLRLPLQDV 507
           NM+  +++MPWFK W +ER      KE  A G  L E LD+ILPP+RP+  PLRLPLQDV
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112

Query: 508 SK 513
            K
Sbjct: 113 YK 114



 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   YYVTIIDAPGHRDFIKNMITGTSQ 73
           YYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 37  YYVTVIDAPGHRDFIKNMITGTSQ 60


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 19/80 (23%), Positives = 37/80 (46%)
 Frame = +2

Query: 17  IDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 196
           +D PGH   +  M+ G +  D A+L+  AG            QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLL-IAGNES-----CPQPQTSEHLAAIEIMKLKHIL 122

Query: 197 VGVNKMDSTEPPYXEPRFEE 256
           +  NK+D  +    + ++++
Sbjct: 123 ILQNKIDLVKESQAKDQYDQ 142


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = +2

Query: 8   VTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGVK 187
           +T ID PGH  F      G +  D  VL+  A  G      ++  ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129

Query: 188 QLIVGVNKMD 217
            LIV +NK+D
Sbjct: 130 PLIVAINKID 139


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 8   VTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTG 112
           + I+D PGH+DF ++     +  D  +++     G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 8   VTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTR 151
           +T++D PGH   IK +I G      A +I   GT   E G  ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVK 143


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 14  IIDAPGHRDFIKNMITGTSQADCAVLI 94
           IID PGH  F      G+S  D A+L+
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILV 708


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 334 WHGDNMLEPSTKMPWFKGWQVERKE 408
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)
          Length = 1101

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 365  PKCLGSRDGRWSVKKAKLTE-XASLKLSMPSCHLPAPLTSP 484
            P C GSRD R++  +   T   +S+KLS  S ++   L +P
Sbjct: 959  PVCFGSRDSRFARFRVPTTGFLSSIKLSRVSGYISCDLNNP 999


>SB_36351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -1

Query: 304 LGCSQSSXCMRILPS*FLKSGLXVWWFSGIHFVY-SYDELFDTEGESEQGM-LTGLTV-L 134
           LG ++SS C R+LP   +  GL +   + +  ++  +  L D   +    M LT L V L
Sbjct: 74  LGVNESSGCFRLLPMKSVTVGLGISSLTALGNIFGGWKTLMDAVSKFADNMSLTKLVVSL 133

Query: 133 RDT 125
           +DT
Sbjct: 134 KDT 136


>SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 485 CVFPCKTYQNRW 520
           C+FPCK  +NRW
Sbjct: 178 CLFPCKRCRNRW 189


>SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08)
          Length = 457

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -1

Query: 304 LGCSQSSXCMRILPS*FLKSGLXVWWFSGIHFVY-SYDELFDTEGESEQGM-LTGLTV-L 134
           LG ++SS C R+LP   +  GL +   + +  ++  +  L D   +    M LT L V L
Sbjct: 235 LGVNESSGCFRLLPMKSVTVGLGISSLTALGNIFGGWKTLMDAVSKFADNMSLTKLVVSL 294

Query: 133 RDT 125
           +DT
Sbjct: 295 KDT 297


>SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)
          Length = 848

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 340 GDNMLEPSTKMPWFKGWQVERKEGKADGK 426
           GDN  + S+++PWF   Q ++ + KAD K
Sbjct: 191 GDNTSKVSSEVPWFN--QRQKPKDKADSK 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,893,530
Number of Sequences: 59808
Number of extensions: 330329
Number of successful extensions: 759
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)