Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20093
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_55830| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_51959| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13)                   27   8.7  
SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)                27   8.7  

>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 19/79 (24%), Positives = 40/79 (50%)
 Frame = +3

Query: 327 DLHRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDH 506
           DLH  + Q  +Q G     + +  + QQ  ++  Q+Q QQ+ L     +  ++QS +++ 
Sbjct: 558 DLHEEEVQHQQQFGLQEQSLGQEQRKQQQQLQQQQQQKQQQQL----QKKQQKQSSMEEK 613

Query: 507 VTEDKQYLKLDNTKGSSDD 563
           ++ + + + L    GSS +
Sbjct: 614 LSSEIEKMTLATGDGSSKE 632


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 419 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCHRGQTVPEAR 538
           S++P +   R S GSL P  +T+  TSRS  R ++   AR
Sbjct: 179 SISPASPALRSSLGSLAPTSRTSTPTSRSTPRSRSRSRAR 218


>SB_55830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +3

Query: 378 PQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQ----QSLLQDHVTEDKQYLKLDNT 545
           P+   P KP Q+ +  L  ++++    EV  R+       ++L  +++  D   +  DNT
Sbjct: 73  PEAFDPDKPLQDGVLKLDTEDKKNKFKEVTSRIQATTTATRTLTAENIITDNTIIITDNT 132

Query: 546 KGSSDDRIIYGDST 587
              +D+ II  D+T
Sbjct: 133 IIITDNTIIITDNT 146


>SB_51959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 249 PWLRLPVMDKGWKGNRQILLPHPV*SDLHRADCQAHKQKGPSR 377
           PW R P     W  + + L+P P  +DL R     HK++  SR
Sbjct: 46  PWTRGPYK-MAWAFSDENLVPEPTQADLERVRRLRHKRRRRSR 87


>SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 176 YLKEKKGEVIKEAVKRLIENGKRNTMASPTS 268
           ++  KK  +IKEA+KR+++N +R  +   TS
Sbjct: 175 FVDGKKLRMIKEAIKRILKNNRRLKIPKVTS 205


>SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13)
          Length = 618

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -1

Query: 473 TGVNFQE--TFLLVLSLESPNAILLWFCWSINLRA*WSLLFMSLTVCSVKITLNWMGK*D 300
           TGV F E   +   L L S +++ +++  ++ LRA ++LLF   T      +L + G  D
Sbjct: 517 TGVQFDEFAVYCKPLELASVDSMYIFYKGALGLRANYTLLFPDKTWSYYWTSLEYSGLLD 576

Query: 299 L 297
           L
Sbjct: 577 L 577


>SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)
          Length = 503

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 155 AIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMASPTSYGQ 277
           A+    + ++++K ++ K+  KRLIE  +RN   +   +GQ
Sbjct: 156 ALQDQQKQVEQEKEQMRKDFEKRLIEEKERNVQGTMAEFGQ 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,970,288
Number of Sequences: 59808
Number of extensions: 409402
Number of successful extensions: 1385
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)