Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20092
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39) 57 2e-08
SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12) 48 6e-06
SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052) 40 3e-05
SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_4699| Best HMM Match : Lig_chan (HMM E-Value=1.1) 32 0.42
SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092) 31 0.97
SB_19775| Best HMM Match : Arm (HMM E-Value=0.27) 30 1.7
SB_59554| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1) 29 3.9
SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16) 29 5.2
SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07) 28 6.9
SB_38912| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_21917| Best HMM Match : CXC (HMM E-Value=0.22) 28 6.9
SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8) 28 6.9
SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_24292| Best HMM Match : LTXXQ (HMM E-Value=1.7) 28 9.1
>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
Length = 401
Score = 56.8 bits (131), Expect = 2e-08
Identities = 24/48 (50%), Positives = 33/48 (68%)
Frame = +1
Query: 508 LLGLGRVGREVATRMYAFGMNIIGFDPFVSADQCAQFHCTKMELEDIW 651
++GLGR+GREVA RM ++G+ IG+DP VS A+ + ME E IW
Sbjct: 13 IIGLGRIGREVALRMQSYGVKTIGYDPLVSPQDAAESNIEWMETEKIW 60
>SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12)
Length = 189
Score = 48.4 bits (110), Expect = 6e-06
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 269 LKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPA-SNAL 445
LKV+ GAG D ID+ +A K+G+ V N PG ++ L+L ARH+V +N
Sbjct: 69 LKVISSIGAGFDRIDIPAATKRGIRVGNTPGVVQDCTADMAIGLLLASARHIVTGDANTR 128
Query: 446 KAG 454
K G
Sbjct: 129 KPG 131
>SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/60 (36%), Positives = 38/60 (63%)
Frame = +2
Query: 269 LKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASNALK 448
LKV+ GAG+DNID+++A ++G+ V N PG + A + L++ AR+V+ A ++
Sbjct: 73 LKVISNIGAGIDNIDLEAAKRRGILVGNTPGISDCLA-DFAWALLMAAARNVIQADAMMR 131
>SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052)
Length = 126
Score = 40.3 bits (90), Expect(2) = 3e-05
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 72 VDIKSVLIVDGVGAKCAELLNAYGIATTTKAKISKEELLMEIP 200
+++K VLI D V + C +L G+ K+SKEEL+ EIP
Sbjct: 4 LELKRVLISDSVDSCCKTILERNGVTVDVNTKLSKEELVSEIP 46
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +2
Query: 251 VDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVI 349
+ AG LK++GRAG GVDNID +A GV V+
Sbjct: 93 IKAGKNLKIIGRAGTGVDNIDTVAASLHGVLVM 125
Score = 25.0 bits (52), Expect(2) = 3e-05
Identities = 9/17 (52%), Positives = 16/17 (94%)
Frame = +3
Query: 204 HDALVVRSATQVTKEVL 254
+D L+VRSAT+V+++V+
Sbjct: 77 YDGLIVRSATKVSEDVI 93
>SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +2
Query: 239 DQRGVDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLAR 418
D +D +L+V+ AG GVD+ID+ +A +G+ V N PG + L+L AR
Sbjct: 60 DSALMDCYPELRVISSAGVGVDHIDLAAATIRGIRVGNTPGVVQECTADHAIGLLLASAR 119
Query: 419 HVVPASNALK 448
+ + ++
Sbjct: 120 KICSGDSVIR 129
>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 32.7 bits (71), Expect = 0.32
Identities = 21/80 (26%), Positives = 36/80 (45%)
Frame = -1
Query: 522 AKAKEARVLPASSLPVYRARSHLPAFSALEAGTTWRARTNINVQVSSHALSALAPGALIT 343
A + + R+ P RA L A +A AGT +R++ +V ++S + + +T
Sbjct: 554 AGSAQGRITTKKKTPPRRANL-LEALTAAAAGTPAASRSSSSVSLASPGMRSSLGSLQLT 612
Query: 342 PTPFLPAESTSMLSTPAPAR 283
P F P S S + P +
Sbjct: 613 PPSFTPRSSISRRRSDTPTK 632
>SB_4699| Best HMM Match : Lig_chan (HMM E-Value=1.1)
Length = 186
Score = 32.3 bits (70), Expect = 0.42
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 116 VCRTPKRLRNRHHHQGQDLQGRTSYGDTQPR 208
+CR+ + RHHH L G +SYG P+
Sbjct: 113 LCRSKRPYGLRHHHHASGLMGASSYGMAMPK 143
>SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092)
Length = 729
Score = 31.1 bits (67), Expect = 0.97
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +1
Query: 400 DVGSGSPRGPSFQCAEGWQVGPGSVHWQRARWQDPRLLGLGRVGREVATRMYAFGMNIIG 579
+ SG R +F E W G+ H +W G+ R R + TR F +IG
Sbjct: 647 EFNSGKVRRSNFSIGEFWLKALGTPHPSSTQWNAGAFFGVTR--RVIRTRTRGFYKRLIG 704
Query: 580 F 582
F
Sbjct: 705 F 705
>SB_19775| Best HMM Match : Arm (HMM E-Value=0.27)
Length = 607
Score = 30.3 bits (65), Expect = 1.7
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = -1
Query: 618 ELGALISRHERVESDDVHAEGVHPSGHLAADPAKAKEARVLPASSLPVYRARSHLPAFSA 439
E G +R R+ S V S + + R+ PASS A+S +P +
Sbjct: 89 EQGGTFNRSRRIPSKRKSQTSV--SSEFKVEEKRFVRNRLKPASSRQEDSAKSIVPDNNK 146
Query: 438 LEAGTTWRARTNINVQVSSHALSALAPGALITPTPF--LPAESTSMLSTPAPA 286
++ ++ T +N + S+H+ + + A + TP LP +STS S+ A
Sbjct: 147 STTVSSCKSTTAVNSRTSTHSAGSKSSSAAYSRTPASGLP-KSTSTSSSKVTA 198
>SB_59554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1247
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = -1
Query: 648 NVLQLHLGAMELGALISRHERVE--SDDVHAEGVHPSGHLAADPAKAKEARVLPASSLPV 475
+++ L+ EL A +R + D HA H + PAKA+ R S +
Sbjct: 727 SLIGLYTRRRELAAAFTRTPAANQRATDPHATDPHVAADDVTPPAKARRWRPHSRSRIAF 786
Query: 474 YRARSHLPAFSALEAGTTWRARTNINVQVSSHALS 370
R R LP +++ T++ + +++ S H +S
Sbjct: 787 RRRRFTLPRLLSMDK-QTFKHKGPTHIRTSVHIMS 820
>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
Length = 630
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 110 RQVCRTPKRL-RNRHHHQGQDLQGRTSYGDTQPRRSGCAFSNSSDQRG 250
RQ C + + R HHH G + S G+ R+ +NSS RG
Sbjct: 364 RQRCNSVGNIARGGHHHHGNMQRRHPSVGNVSSNRNADHVANSSAPRG 411
>SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)
Length = 896
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 663 SPLKPNVLQLHLGAMELGALIS--RHERVESDDVHAEGVHPSGHL 535
+PLKP +L G L A RH+R H+ G H GH+
Sbjct: 528 NPLKPGTRRLCGGVRALNAKFQTHRHQRESKKAKHSRGDHNFGHV 572
>SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07)
Length = 585
Score = 28.3 bits (60), Expect = 6.9
Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 1/127 (0%)
Frame = -1
Query: 717 GIDKVSSR-LNEAECAG*CSPLKPNVLQLHLGAMELGALISRHERVESDDVHAEGVHPSG 541
G K S R + G S + P + G +SR D + EG G
Sbjct: 270 GTTKASERTITSGNTLGSKSTITPGTTESPESTAAPGTTVSREGTNTPDSLLPEGTTAPG 329
Query: 540 HLAADPAKAKEARVLPASSLPVYRARSHLPAFSALEAGTTWRARTNINVQVSSHALSALA 361
A+ + + S S + + S+ GTT + + + ++ + S +A
Sbjct: 330 TTFANESTVVSGTTISPES--TVAPESTIASESSAAPGTTESSESTVEPLTTAASESTVA 387
Query: 360 PGALITP 340
PG ++P
Sbjct: 388 PGTTLSP 394
>SB_38912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 131 KRLRNRHHHQGQDLQGRTSYGDTQPRRSGCAFSNSS 238
+R ++R DL +GD QPRRS F NSS
Sbjct: 87 RRTKSRSSSLKDDLSPFLVFGDWQPRRSERIFINSS 122
>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2492
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 570 VHAEGVHPSGHLAADPAKAKEARVLPASSLPVYRARSHLPAFSALEAG 427
V E V G A A+ + +L +S+ P++ +++ +P F A AG
Sbjct: 1886 VWTEEVRRPGSKGAYRAQTPRSTILSSSAAPIFGSQAWMPLFGAKTAG 1933
>SB_21917| Best HMM Match : CXC (HMM E-Value=0.22)
Length = 470
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 317 DSAGKKGVGVINAPGANALSACELTCTLML 406
D G+ GV V +APG C++ CT L
Sbjct: 235 DEMGRAGVTVEHAPGDADYKICQMACTYAL 264
>SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 390 VSSHALSALAPGALITPTPFLPAESTSML 304
+S H L LA G PTP +PA + S+L
Sbjct: 163 LSPHELRLLAKGLKFIPTPPIPASNKSLL 191
>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
Length = 594
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 379 VRADLHVDVGSGSPR--GPSFQCAEGWQVGPGSVH-WQRARWQDP 504
VR ++ G G+ GPS AEG ++GP +VH A W++P
Sbjct: 328 VRGPFNLSHGPGNRNRYGPSLVHAEGLRLGPKTVHRILHAVWKNP 372
>SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +2
Query: 119 CRTPKRLRNRHHHQGQDLQGRTSYGDTQPRRSGCA 223
C P+ +R+ G+ Y ++ PR GCA
Sbjct: 5 CYLPREIRSSSPSPGRSANPHCRYNESNPRTQGCA 39
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 117 CAELLNAYGIATTTKAKISKEELLMEIPNHDALVV 221
C L N Y A+T++ K SKE+++ ++ +VV
Sbjct: 3040 CQTLNNTYSPASTSRVKASKEQIISANSSYAEIVV 3074
>SB_24292| Best HMM Match : LTXXQ (HMM E-Value=1.7)
Length = 288
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = -1
Query: 522 AKAKEARVLPASSLPVYRARSHLPAFSALEAGTTWRARTNINVQVSSHALSALAPGALIT 343
A + + R+ + P RA L AF+A AGT +R++ ++ ++S + + T
Sbjct: 67 AGSAQGRITNKTKTPPRRANL-LEAFTAT-AGTPAASRSSSSISLASPGMRSSLGSLQRT 124
Query: 342 PTPFLPAESTSMLSTPAP 289
P F P S S + P
Sbjct: 125 PPSFTPRSSISRRRSDTP 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,883,428
Number of Sequences: 59808
Number of extensions: 447484
Number of successful extensions: 1451
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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