Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20090
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   154   4e-38
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   1e-15
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 54   8e-08
SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.050
SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)                     29   1.9  
SB_2156| Best HMM Match : DUF1378 (HMM E-Value=6.3)                    29   2.5  
SB_38648| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_19676| Best HMM Match : Ctr (HMM E-Value=3.1)                       29   3.3  
SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_28265| Best HMM Match : Ank (HMM E-Value=6.3e-20)                   28   4.4  
SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05)           28   5.8  
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)                  28   5.8  
SB_14902| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  154 bits (374), Expect = 4e-38
 Identities = 71/85 (83%), Positives = 79/85 (92%)
 Frame = +2

Query: 254 QNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIK 433
           +NPADLPKLVEGL RLAKSDPMVQ   EESGEHIVAGAGELHLEICLKDLEEDHACIP+K
Sbjct: 486 KNPADLPKLVEGLNRLAKSDPMVQSFTEESGEHIVAGAGELHLEICLKDLEEDHACIPLK 545

Query: 434 KSDPVVSYRETVAEESDQLXLSKSP 508
           KS+PVVSYRE V+++S+Q+ LSKSP
Sbjct: 546 KSEPVVSYRECVSDKSNQMCLSKSP 570



 Score =  151 bits (365), Expect = 5e-37
 Identities = 70/85 (82%), Positives = 78/85 (91%)
 Frame = +3

Query: 3   RIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 182
           RIMGP++ PGKKEDLY KTIQRTILMMGRY+E I DVP GNI GLVGVDQFLVKTGTI+T
Sbjct: 402 RIMGPHYVPGKKEDLYLKTIQRTILMMGRYIEPIVDVPCGNIVGLVGVDQFLVKTGTIST 461

Query: 183 FKNAHNMKVMKFSVSPVVRVAVEPK 257
           +++ HNMK+MKFSVSPVVRVAVEPK
Sbjct: 462 YEHCHNMKMMKFSVSPVVRVAVEPK 486


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/84 (41%), Positives = 59/84 (70%)
 Frame = +2

Query: 257 NPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKK 436
           NP++LPK+++GL+++ KS P++    EESGEH++ G GEL+L+  + DL   ++ I IK 
Sbjct: 464 NPSELPKMLDGLRKVNKSYPLLTTKVEESGEHVILGTGELYLDCIMHDLRRMYSEIDIKV 523

Query: 437 SDPVVSYRETVAEESDQLXLSKSP 508
           +DPV+++ ETV E S     +++P
Sbjct: 524 ADPVIAFCETVVETSSLKCFAETP 547



 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
 Frame = +3

Query: 3   RIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 182
           RI+G N+T   +ED     + R  +   RY   +  VP+GN   + GVDQ +VKT TIT 
Sbjct: 376 RILGENYTMEDEEDSRVGIVGRLWIAEARYNIEVNRVPAGNWVLIEGVDQPIVKTATITE 435

Query: 183 F---KNAHNMKVMKFSVSPVVRVAVEP 254
               + A+  + +KF+    +++AVEP
Sbjct: 436 VQGSEEAYIFRPLKFNTCSTIKIAVEP 462


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 19/41 (46%), Positives = 31/41 (75%)
 Frame = +2

Query: 347 EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 469
           EH++  AGE+HL+ C+ DL+  +AC+ +  SDP++ +RETV
Sbjct: 2   EHVIIAAGEVHLQRCVDDLKRRYACVELNVSDPIIPFRETV 42


>SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 34.7 bits (76), Expect = 0.050
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 266 DLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEI 388
           DL +  + + R  + DP  +   ++ES E I++G GELHL++
Sbjct: 36  DLDQFSKAINRFTREDPTFRVRFDDESKETIISGMGELHLDV 77


>SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)
          Length = 160

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 314 PMVQCINEESGEHIVAGAGELHLEICLKDLEE 409
           P  Q + E   EH+VA +G+L  E C K L +
Sbjct: 26  PTWQRVKEFQNEHLVAQSGKLRFEACKKTLSK 57


>SB_2156| Best HMM Match : DUF1378 (HMM E-Value=6.3)
          Length = 210

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -3

Query: 233 DW*YTEFHHLHVVGILESGDGTSLD*ELIDSNETTDVTRGHILNSFNITS 84
           DW  T  HH    G  ++ DG   D E+ DSN+   VT    L++ NI S
Sbjct: 152 DWALTNPHHDGPDG--KTSDGNKTDSEIQDSNKKESVTDKISLDACNIMS 199


>SB_38648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 25/91 (27%), Positives = 40/91 (43%)
 Frame = +2

Query: 206 GDEIQCITSRACRC*AQNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLE 385
           G  +Q    RA    A+   +L ++     RL   D  V+   +  G H ++G+GE  LE
Sbjct: 259 GIVLQIFKERAQTAEAKIQVELAEIPYIRSRLV-GDDSVEFDQQRGGTHFISGSGETQLE 317

Query: 386 ICLKDLEEDHACIPIKKSDPVVSYRETVAEE 478
              + L E    +  KK + +  +RE V  E
Sbjct: 318 RERRVLTERELKLK-KKLEALRKHREHVRHE 347


>SB_19676| Best HMM Match : Ctr (HMM E-Value=3.1)
          Length = 311

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -3

Query: 224 YTEFHHLHVVGILESGDGTSLD*ELIDSNETTDVTRGHILNSFNITSHHKDCTLDSLL 51
           + E HHLH      S + +     L+  N T  + R H+  S   T+    C L ++L
Sbjct: 93  FWESHHLHFTAPSNSSEDSYYHGNLMLRNHTNRILRDHVFTSAACTTKLVVCYLIAIL 150


>SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +2

Query: 302 AKSDPMVQ---CINEESGEHIVAGAGELHLEICLKDLEEDH 415
           AK DP +    C NE+SGEH  +  GE +L I ++ +++D+
Sbjct: 7   AKIDPNLGTRICFNEDSGEH-YSCHGEENLAISMEGMDKDY 46


>SB_28265| Best HMM Match : Ank (HMM E-Value=6.3e-20)
          Length = 165

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 275 KLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLK 397
           ++V+ L   A  DP  + +N  S  H  A  G+LH   CLK
Sbjct: 119 EVVKWLVEKANCDPGAKTLNRMSAIHFAASGGDLH---CLK 156


>SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05)
          Length = 974

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +2

Query: 329 INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLXL 496
           +N + GE  V G  E    +C + +  DH C      D +   R +  ++ D + L
Sbjct: 199 VNRKEGEEHVCG--EYKCSVCKEVVPPDHLCYVTVGGDALPKKRNSADDDDDSMRL 252


>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
          Length = 559

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 203 EGDEIQCITSRACRC*AQNPADLPKLVEGLKRLAKSDPM 319
           EGD+I+        C   N    PKLVE LK++  + P+
Sbjct: 146 EGDQIESFQDSEISCEFSNFGVHPKLVEKLKKMGITKPV 184


>SB_14902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = -2

Query: 540 LSLHE*TVVLVGDFEXQSWSDSSATVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSPAP 361
           LSL    ++L+G       S S + +S    +  D + G+  W ++RS++  + +  P+ 
Sbjct: 150 LSLFCNVLLLIGKIVASYLSGSLSIISSLVDSAVDLVSGIIFWYTTRSIKTTNFYEYPSG 209

Query: 360 ATMCSPDSSLI 328
            T   P + +I
Sbjct: 210 KTRLEPVAVII 220


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 3    RIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAI-EDVPSGNICGLVGV 146
            +++ P  T GK      +   RT +M     EAI EDVPSG + GL  +
Sbjct: 2133 KVIQPETTSGKSTIATSQDYHRTTVMDLFREEAIKEDVPSGLLQGLTQI 2181


>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1453

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
 Frame = +2

Query: 221  CITSRACRC*AQNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGEL-------- 376
            C+ SRA      NP +    +  L+R       V+ I  + G + V    EL        
Sbjct: 1255 CMASRAIHIEVANPLETDSFLNSLRRFMSRRGSVRQIRCDQGTNFVGAQNELTRALAEMD 1314

Query: 377  HLEICLKDLEEDHACIPIKKSDPVVSY 457
            H +I  K LEE    I  K + P  S+
Sbjct: 1315 HEKIKEKLLEEQCDWITFKMNVPSASH 1341


>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = -2

Query: 522 TVVLVGDFEXQSWSDSSATVSRYDTT--GSDFLIGMQAWSSSR-SLRQISRWSSPAPATM 352
           T  +  D E  S+ DSS   SR+ +T  GS  L G       R  + ++ R SS +  T 
Sbjct: 533 TSTMSSDIETTSYMDSSDDQSRFSSTTEGSHLLSGRHRRRRRRPRMPRVQRCSSFSTITE 592

Query: 351 CSPDSSLIHCTMGSD 307
            +   ++I  T+  D
Sbjct: 593 STMSLNIITITLNMD 607


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,958,471
Number of Sequences: 59808
Number of extensions: 383551
Number of successful extensions: 928
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)