Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20086X
         (334 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6938| Best HMM Match : Nodulin-like (HMM E-Value=0.17)              29   1.2  
SB_435| Best HMM Match : zf-CCHC (HMM E-Value=2)                       28   1.6  
SB_6170| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.9  
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_24469| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_30275| Best HMM Match : EGF_CA (HMM E-Value=1.3e-13)                26   6.6  
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_55265| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_15511| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  

>SB_6938| Best HMM Match : Nodulin-like (HMM E-Value=0.17)
          Length = 484

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 261 LSGTVGTVCNRCAYTVTLALR 323
           +  T+GT+C RC  + T ALR
Sbjct: 369 IGSTLGTICRRCCVSTTKALR 389


>SB_435| Best HMM Match : zf-CCHC (HMM E-Value=2)
          Length = 913

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 330 QINVVRG*QCRRIGCIPCRPSPI 262
           Q   V G QC RIGC+ C   PI
Sbjct: 117 QSTTVEGRQCSRIGCLACCLPPI 139


>SB_6170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 172 FQTFATEVRTRGELSKMLES 231
           FQTF   V TRG++ +MLE+
Sbjct: 195 FQTFTPIVTTRGDIKRMLEA 214


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 245 ENSQRLSSILLNSPRVRTSVANV*KTFYAGRSEATSYTECCPNT 114
           EN++  S+  +NSP    ++ N    +  G+S +T  TE   NT
Sbjct: 726 ENTRGNSNTQINSPYPSVNMTNEGSQYAPGQSNSTYLTESAGNT 769


>SB_24469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 208 RHASGPRWRMFEKHFTQVGVRPPVTPNVAQ 119
           RH     + +F+K F ++G +PPV    A+
Sbjct: 41  RHLGSGAFGVFKKAFLKIGAKPPVNVEKAE 70


>SB_30275| Best HMM Match : EGF_CA (HMM E-Value=1.3e-13)
          Length = 142

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 232 RWLFSDCKSRYRGRSARYATDAPTLLPSHYV 324
           RWLF D + +  G      +D     P H++
Sbjct: 28  RWLFQDAELKAEGLQCELNSDTHFAFPEHFI 58


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 57   LTIEIVSVTVRF-YIKDSMCGIWATFGVTGGLTPTCVKCFSNIRHRGPDAWRIEQDAREP 233
            LT ++V +T+    + D    + + + +   L   C     +  H  PD    EQ AR P
Sbjct: 1148 LTTKLVGITLPIDSVVDLHNELVSDYIINNELRTLCGSRLYSAHHAEPDKQAAEQTARMP 1207

Query: 234  LAIL 245
            LA++
Sbjct: 1208 LALV 1211


>SB_55265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 283 TVPTVPDSETCNPRIANGSLASCSIRHASGP 191
           +V  +PD     PR A  +L S  +R A GP
Sbjct: 139 SVTEIPDDLFVTPREATAALRSIKLRKALGP 169


>SB_15511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 739

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 162 VKCFSNIRHRGPDAWRIEQDAREPLAIL 245
           VKCF N+ H   DA+  E +  E +A++
Sbjct: 288 VKCFRNLFHVPADAYYTEVEQDEMIAVV 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,584,599
Number of Sequences: 59808
Number of extensions: 201385
Number of successful extensions: 440
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)