Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20045X
(339 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 30 0.55
SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12) 29 1.3
SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.7
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) 28 2.2
SB_23517| Best HMM Match : WD40 (HMM E-Value=0) 27 2.9
SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_58599| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_51512| Best HMM Match : Abhydro_lipase (HMM E-Value=9.8e-06) 26 6.8
SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05) 26 6.8
SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12) 26 9.0
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74) 26 9.0
SB_8246| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24) 26 9.0
SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05) 26 9.0
SB_8486| Best HMM Match : Granulin (HMM E-Value=0) 26 9.0
SB_1049| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 937
Score = 29.9 bits (64), Expect = 0.55
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 312 VLCNNFLCRCRPTACSSTPC 253
V+C+ F+C+CR + C T C
Sbjct: 765 VVCHRFICQCRMSLCCVTTC 784
>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
Length = 672
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/76 (22%), Positives = 31/76 (40%)
Frame = -1
Query: 258 PCVPSLVNDQVVNYILDDGXXXXXLIFQALTDSTVVVAGEDAVVQFLLEVLVRSVRG*FN 79
PC L+N + +N L DG L F + ++G+ V+ + R
Sbjct: 446 PCAAGLLNRKHLNIWLSDGNTLGKLHFDPFENFLCQISGKKQVILYEPHDNTRLYEAHIQ 505
Query: 78 DARAGGEHAHRKYNEK 31
++ HAH+++ K
Sbjct: 506 ESMLEYNHAHKEFRRK 521
>SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 224 LTTFSMMEPLPWLSYSKL*RTALS*SPVRMLLYSFSSRSWLEVSA 90
+ F ++PL L+YS+ RTA+ P ++ + R+W E A
Sbjct: 185 VVNFEPLKPLFMLAYSRS-RTAIPAGPALPNIFGYPHRNWKEAGA 228
>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
Length = 1514
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 59 SPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKAR 199
+PP+R S R+ SR T S+P T + S RA + R KA+
Sbjct: 1359 APPSRTSTPRSRSTPRSRSRSRTRTPSTPFTPSTTSSRA-SSRGKAK 1404
>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
Length = 860
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Frame = +2
Query: 110 TSRRNCTTASSPATTTVLS------VRAWNMRAKARAP 205
TSR NC + P +T ++S +R W+ R++++ P
Sbjct: 655 TSRVNCVKFNQPDSTVIISGSYDSTIRCWDCRSRSQEP 692
>SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 851
Score = 27.1 bits (57), Expect = 3.9
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +1
Query: 223 NNLIIDKRRNTWSTATSCGSATAQ 294
NN++++K+R W+ + G++TA+
Sbjct: 813 NNVVVEKKRMRWTRSKEDGNSTAE 836
>SB_58599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 616
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Frame = -1
Query: 306 CNNFLCR---CRPTACSSTPCVPSL 241
C LC+ C PT C T CVP+L
Sbjct: 359 CVPTLCKHTICVPTLCEHTACVPTL 383
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 285 CRPTACSSTPCVPSL 241
C PT C T CVP+L
Sbjct: 339 CLPTLCEHTVCVPTL 353
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 285 CRPTACSSTPCVPSL 241
C PT C T CVP+L
Sbjct: 349 CVPTLCEHTACVPTL 363
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Frame = -1
Query: 309 LCNNFLCR---CRPTACSSTPCVPSL 241
+C LC C PT C T CVP+L
Sbjct: 368 ICVPTLCEHTACVPTLCKHTICVPTL 393
>SB_51512| Best HMM Match : Abhydro_lipase (HMM E-Value=9.8e-06)
Length = 226
Score = 26.2 bits (55), Expect = 6.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 258 EYCYKLWVGNGTGNCYKVLPIKL 326
+ C+ +W+GN GN Y +KL
Sbjct: 49 DQCFDVWLGNVRGNTYGKRHVKL 71
>SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 668
Score = 26.2 bits (55), Expect = 6.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 258 EYCYKLWVGNGTGNCYKVLPIKL 326
+ C+ +W+GN GN Y +KL
Sbjct: 372 DQCFDVWLGNVRGNTYGKRHVKL 394
>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
Length = 1023
Score = 26.2 bits (55), Expect = 6.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 225 QPDH*QETEHMEYCYKLWVGNG 290
+P H T ++Y Y+LW G G
Sbjct: 753 RPRHPSSTSTVKYRYRLWTGKG 774
>SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12)
Length = 353
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 59 SPPARASLNYPRTLLTKTSRRNCTTASSPATTTV 160
+P A + RT +S RNCTT + +TTTV
Sbjct: 124 APTASVTTEKSRTS-EDSSNRNCTTPINQSTTTV 156
>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
Length = 328
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -1
Query: 312 VLCNNFLCRCRPTACSSTPCVPSLV 238
V C +C C P C+ C P +V
Sbjct: 228 VTCRCSVCTCCPCDCTCLQCAPCIV 252
>SB_8246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 10 KAPNKMKLLVVFAMCMLAASAGVVELSADTSN 105
+AP K+ V A CM A+A V SADT+N
Sbjct: 44 QAP-KVLAAVSSASCMWTANAATVSPSADTAN 74
>SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24)
Length = 398
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 59 SPPARASLNYPRTLLTKTSRRNCTTASSPATTTV 160
+P A + RT +S RNCTT + +TTTV
Sbjct: 169 APTASVTTEKSRTS-EDSSNRNCTTPINQSTTTV 201
>SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05)
Length = 1122
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 32 FSLYLRCACSPPARASLNYPRTLLTKTSRRNCTTASSPAT 151
+ L+ R PP+ S + TLLT R NC T + P T
Sbjct: 256 YQLFSRPPLLPPS--SEPFDITLLTILLRNNCPTLTEPVT 293
>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
Length = 878
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = -3
Query: 196 CLGSHIPSSDGQHCRSRR*G--CCCTV 122
C GSH+ DG C +R G CC +
Sbjct: 551 CEGSHLACPDGTTCCKKRSGGYACCPI 577
>SB_1049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 116 SRSWLEVSADSSTTPALAASM 54
+ SW+E A+ T PAL AS+
Sbjct: 242 ANSWIESDANQPTKPALTASL 262
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,689,587
Number of Sequences: 59808
Number of extensions: 204783
Number of successful extensions: 659
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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