Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20043
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   28   5.2  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +1

Query: 163 KHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTSSGDCFPVEFRLIF 327
           K L E+K++E   +V+NK+   N     E    + ++A  T +    PVEF L+F
Sbjct: 175 KKLPEDKRNEY-QSVLNKIDNYNMQELGELIKKYDAKATTTGNDLSDPVEFNLMF 228


>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +1

Query: 109 QLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTS 288
           ++YNS+    Y+S   K  +    K +  + N +   + N + NC+ + IN    +   S
Sbjct: 325 EIYNSLDNKIYNSLDNKIYNSLNNKINNSLDNKIYNSLDNKRYNCLNFHINTDHHSYHAS 384

Query: 289 S 291
           S
Sbjct: 385 S 385



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +1

Query: 109 QLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTS 288
           ++YNS+    Y+S   K  +    K +  + N +   + N + NC+ + IN    +   S
Sbjct: 418 EIYNSLDNKIYNSLDNKIYNSLNNKINNSLDNKIYNSLDNKRYNCLNFHINTDHHSYHAS 477

Query: 289 S 291
           S
Sbjct: 478 S 478


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 436 QDKPESQLEVNRSVGEQQGLLQDLDTERNQY 528
           + KP S    NR+ G ++G +QD   +R  Y
Sbjct: 354 ESKPSSSSSKNRNTGLERGRVQDFGRDRRDY 384


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 74  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 205
           +IPTS     R SFTI    P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 28/109 (25%), Positives = 51/109 (46%)
 Frame = +2

Query: 239  TAWSTLSTLAPGLQGHRPVIVSQLSSDLSSPKTRLSLCTSATVSL*TLSNDVQGDDGRPA 418
            T  ST STLA  +    PV+ +  +S L+S     S+ T++T S  +L + +  +     
Sbjct: 758  TTNSTTSTLAEAVAISSPVLPT-TTSVLTSSMESSSIATTSTTSTPSLESSMTTNSTTST 816

Query: 419  YGDGKDKTSPRVSWKLIALWENNKVYFKILTLNVTNTWYWESALTGTAT 565
              +    +SP V     ++  ++     I T + T+T   ES++T  +T
Sbjct: 817  LAEAVAISSP-VLPTTTSVLTSSMESSSIATTSTTSTPSLESSMTTNST 864


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,911,813
Number of Sequences: 59808
Number of extensions: 316423
Number of successful extensions: 1000
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)