Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30135
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)           51   7e-07
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)                    32   0.32 
SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)                30   1.3  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   4.0  
SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)           27   6.9  
SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_45350| Best HMM Match : PAN (HMM E-Value=0.00039)                   27   9.2  
SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27)               27   9.2  

>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
          Length = 288

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 25/61 (40%), Positives = 38/61 (62%)
 Frame = +1

Query: 307 KVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALV 486
           K  E   + +LDEA +RL +V +D   Y +++  LI Q L+QL+E  V IR R+ D +LV
Sbjct: 68  KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQDVSLV 127

Query: 487 E 489
           +
Sbjct: 128 K 128


>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
          Length = 739

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 292 RLKVLKVREDHVRNVLDEARKRLAEV 369
           R+  LK +ED ++N+LDE R +  EV
Sbjct: 147 RINTLKTKEDEIKNILDEQRGKAEEV 172


>SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)
          Length = 214

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -3

Query: 337 VHYVRDLHELSVP-----SDELGSACSKIGSSSEVQPASPSFHSIP*S*DVAAGQDGP 179
           ++Y++D H    P     + E G A + + S S    A P F SIP   D +  +DGP
Sbjct: 19  LYYLQDTHHNWYPVYCDFTSEAGKAWTLVLSFSYANHAKPEFFSIPFLDDGSLSEDGP 76


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +1

Query: 295  LKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 405
            LK+LK R  H RN   EA+++  E  ++TK++ ++ +
Sbjct: 2941 LKILKERRMHARN---EAKRQAIEKERETKIHRKIAI 2974


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +1

Query: 286  QARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSE 396
            QA L+  +  +D+++   D  +KRLA++  + ++YS+
Sbjct: 2459 QAELEAARQSKDNLQEDFDNLQKRLAQLEAEQEIYSK 2495


>SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)
          Length = 514

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 319 DHVRNVLDEARKRLAEVPK-DTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESL 495
           D V   L+E   R  E+    T    +L   L+    FQL    + + +RQTD  L E L
Sbjct: 164 DLVHAQLEEVNHRWDELCNHSTGRQQKLEEALLQLGQFQLAFQELLVWLRQTDSTLDEQL 223

Query: 496 LGKAQTD 516
             K Q D
Sbjct: 224 AKKVQGD 230


>SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 171 HRKGPSCPAATSQDYGIL*KEGEAG*TSEEDPIFEHAEP 287
           H K  SC   +  D+  L   GEAG TSE +P   + +P
Sbjct: 23  HWKSNSCKMDSDSDWDSL--SGEAGPTSEPEPTPRNLQP 59


>SB_45350| Best HMM Match : PAN (HMM E-Value=0.00039)
          Length = 334

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -3

Query: 337 VHYVRDLHELSVP-----SDELGSACSKIGSSSEVQPASPSFHSIP*S*DVAAGQDGP 179
           ++Y++D H    P     + E G A + + S S    A P F SIP   D +  +D P
Sbjct: 139 LYYLQDTHHNWYPVYCDFTSEAGKAWTLVLSFSYANHAMPEFFSIPFLDDGSLSEDSP 196


>SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27)
          Length = 447

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 292 RLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSEL 399
           R++  K   D + + L E R+RL   P+D + Y  L
Sbjct: 120 RVQTAKKELDFIHSQLSEVRRRLDRTPRDDERYLTL 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,831,635
Number of Sequences: 59808
Number of extensions: 245189
Number of successful extensions: 760
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)