Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30114
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)             136   1e-32
SB_50761| Best HMM Match : RCSD (HMM E-Value=4.4)                      29   1.7  
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   27   6.9  
SB_12853| Best HMM Match : RhoGAP (HMM E-Value=9.5e-13)                27   9.2  
SB_3525| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score =  136 bits (328), Expect = 1e-32
 Identities = 56/120 (46%), Positives = 81/120 (67%)
 Frame = +1

Query: 127 VPDLEKLLERDGYLKPYEREIRRRYACYKDIWDRIESWDGGLEAFTKGYKYYGPQFNQDG 306
           VP+L K L  D Y++PY +EI RRY C+K I   I++ +GGLE F++GY+ +G      G
Sbjct: 135 VPELSKFLHDDPYIQPYVQEIERRYKCFKSIKTDIQNHEGGLEPFSRGYEKFGINRTASG 194

Query: 307 SVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDSRVQI 486
              +REWAPGAH + L G+FNGW+  SHP  + EYG WE++IP   +GS ++ H S+V++
Sbjct: 195 GQVYREWAPGAHGVFLIGDFNGWNRTSHPCKRNEYGVWELEIPCLDNGSLSIPHGSKVKV 254


>SB_50761| Best HMM Match : RCSD (HMM E-Value=4.4)
          Length = 482

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 260 NASKPPSHDSIRSQMSL*QAYL 195
           NA +PPSH SI+SQ S+ ++ L
Sbjct: 453 NAQRPPSHQSIKSQQSVIKSIL 474


>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 477 TGVVFQCTRTIWICGDLNLPFAVLLFSEWMALRVPSIEFTS 355
           T V   CT   + C D    F +LLF   + +RV S+   S
Sbjct: 614 TSVQVLCTAPCYFCSDSLYRFVLLLFRLSVQVRVTSVRIVS 654


>SB_12853| Best HMM Match : RhoGAP (HMM E-Value=9.5e-13)
          Length = 687

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 335 ERIAYIFEVNSMDGTRRAIHSLKRS-TANGRFKSPQIQMVRVH*N 466
           E IAY+FEV + D T R +  +K + T   R      + ++ H N
Sbjct: 30  ENIAYLFEVKTSDETMRFLLEVKNAITVLERANGVYAKKIKTHKN 74


>SB_3525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 45 NCICKYIHNYLQYN 86
          NCICKY+ N +++N
Sbjct: 41 NCICKYVWNSIRFN 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,237,060
Number of Sequences: 59808
Number of extensions: 415643
Number of successful extensions: 1104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)