Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30102
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35) 118 4e-27
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 113 6e-26
SB_54820| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 3e-10
SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07) 57 1e-08
SB_7860| Best HMM Match : Gelsolin (HMM E-Value=0.0032) 53 1e-07
SB_14141| Best HMM Match : HH_signal (HMM E-Value=0) 43 1e-04
SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092) 41 7e-04
SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12) 39 0.003
SB_38607| Best HMM Match : Gelsolin (HMM E-Value=0.0024) 38 0.005
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 38 0.005
SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.046
SB_54818| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_49838| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.43
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) 31 0.74
SB_31322| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_13852| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 28 4.0
SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 28 5.3
SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45) 28 5.3
SB_13482| Best HMM Match : Herpes_gI (HMM E-Value=0.96) 27 6.9
SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25) 27 6.9
SB_46433| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_49759| Best HMM Match : bZIP_1 (HMM E-Value=0.93) 27 9.2
SB_20599| Best HMM Match : UPF0172 (HMM E-Value=7.2) 27 9.2
SB_6195| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)
Length = 1078
Score = 118 bits (283), Expect = 4e-27
Identities = 63/139 (45%), Positives = 83/139 (59%), Gaps = 2/139 (1%)
Frame = +2
Query: 41 AFADAGRKPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNT--TGDKDRLTWDIHFWL 214
A+ +AG + GL+IWRIE F+ + +G FY GDSYI+LNT +D L +D+HFW+
Sbjct: 468 AWKNAGTREGLQIWRIEKFKVKVWSREDYGSFYDGDSYIILNTYKESGEDELKYDVHFWI 527
Query: 215 GSRTSQDEAGAAAILTVNLDDEQFQGSAVQHREVQYYXSKEFLEYFSPAIRYLKGGHASG 394
G ++QDE G AA TV L D +QHREVQ + SK F YF ++ LKGG SG
Sbjct: 528 GKDSTQDEYGTAAYKTVEL-DIHLNDKPIQHREVQGFESKLFKSYFK-SLTILKGGVDSG 585
Query: 395 FXHVTINEGTXKRLFXIKG 451
F HV E RL ++G
Sbjct: 586 FRHVKPQE-YKPRLLRVRG 603
Score = 66.5 bits (155), Expect = 1e-11
Identities = 30/58 (51%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Frame = +2
Query: 107 AVPKTQFGLFYSGDSYIVLNTTGD--KDRLTWDIHFWLGSRTSQDEAGAAAILTVNLD 274
+V + +G FY GDSYI+LNT D +D L +D+HFW+G ++QDE G AA TV LD
Sbjct: 879 SVLRDDYGKFYDGDSYIILNTYKDPEEDELKYDVHFWIGKDSTQDEYGTAAYKTVELD 936
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 113 bits (273), Expect = 6e-26
Identities = 62/143 (43%), Positives = 85/143 (59%), Gaps = 3/143 (2%)
Frame = +2
Query: 41 AFADAGRKPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDK---DRLTWDIHFW 211
A+ +AG K GL+IWRI F+ PK ++G FY+GDSYI+L T +K ++L +D+HFW
Sbjct: 513 AWKNAGEKVGLQIWRINKFKVEEWPKEKYGQFYAGDSYIILWTYEEKEDTEKLCYDLHFW 572
Query: 212 LGSRTSQDEAGAAAILTVNLDDEQFQGSAVQHREVQYYXSKEFLEYFSPAIRYLKGGHAS 391
+G ++QDE G AA TV L D VQHRE+ + S F YF +I YLKGG +
Sbjct: 573 IGRGSTQDEYGTAAYKTVEL-DTYLNDVPVQHREIMNHESDMFKTYFK-SITYLKGGAET 630
Query: 392 GFXHVTINEGTXKRLFXIKGKRN 460
GF V E R+ + G +N
Sbjct: 631 GFNQVKPKE-YKPRILKVSGDKN 652
>SB_54820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 62.1 bits (144), Expect = 3e-10
Identities = 41/102 (40%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Frame = +2
Query: 32 VHQAFADAGRKPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLN--------TTGDKDR 187
V AF AG+KPGLEIWRIE + VA +G FYSGDSYI L+ GD
Sbjct: 3 VDDAFVQAGQKPGLEIWRIEKLKVVAQDPKTYGTFYSGDSYICLSVELHYKSLNKGDVFI 62
Query: 188 LT--WDIHFWLGSRTSQDEAGAAAILTVNLDDEQFQGSAVQH 307
L +I+ W GS+ S+ E + + DE+ G A H
Sbjct: 63 LDDGLNIYCWNGSQCSRVERMKGIDVAKRIRDEERGGRAQVH 104
>SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07)
Length = 546
Score = 56.8 bits (131), Expect = 1e-08
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +2
Query: 50 DAGRKPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNT-TGDKDRLTWDIHFWLGSRT 226
D GR + +R+ + V G+F+SGDSY+V+ T + + I+FW G+ +
Sbjct: 153 DDGRSKEVGFYRVTDGGKVQCNTAAKGIFFSGDSYLVVYTYRTQRGQKKSIIYFWKGNDS 212
Query: 227 SQDEAGAAAILTVNLDDEQFQGSAVQ 304
E GAAA LTV+LD+ F G AVQ
Sbjct: 213 RVFEKGAAAKLTVDLDNNNFGGDAVQ 238
>SB_7860| Best HMM Match : Gelsolin (HMM E-Value=0.0032)
Length = 675
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = +2
Query: 29 EVHQAFADAGRKPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNT 169
E A+ AG++ G+++WRI F+ PK +G FY+GDSYIVLNT
Sbjct: 356 EGEPAWEGAGKEVGVQVWRIVKFKVTHWPKQDYGHFYNGDSYIVLNT 402
>SB_14141| Best HMM Match : HH_signal (HMM E-Value=0)
Length = 754
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 134 FYSGDSYIVLNTTGDKDRLTWDI-HFWLGSRTSQDEAGAAAILTVNLDDEQFQGSAVQHR 310
FY GDSY++L+ DK + H G S DE AA + +DDE F G A Q
Sbjct: 677 FYDGDSYVILDYRKDKTNKKQPVLHILHGKNASTDELFFAATKAIAIDDEYFGGKAKQTV 736
Query: 311 EV 316
+V
Sbjct: 737 QV 738
>SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)
Length = 341
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +2
Query: 188 LTWDIHFWLGSRTSQDEAGAAAILTVNLDDEQFQGSAVQHREVQYYXSKEFLEYF 352
L ++HFW+GS S +E AA V L + +G VQ+RE + Y ++EF + F
Sbjct: 19 LLHNLHFWVGSECSAEEYCTAAYKAVEL-FVKLEGKPVQYREAEGYETEEFRKCF 72
>SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)
Length = 446
Score = 38.7 bits (86), Expect = 0.003
Identities = 33/109 (30%), Positives = 50/109 (45%)
Frame = +2
Query: 176 DKDRLTWDIHFWLGSRTSQDEAGAAAILTVNLDDEQFQGSAVQHREVQYYXSKEFLEYFS 355
+ D+L W I++W+G S++E G DE S+EF E F
Sbjct: 266 ETDQLFWQIYYWIGKEASREEQG----------DE----------------SEEFHELFD 299
Query: 356 PAIRYLKGGHASGFXHVTINEGTXKRLFXIKGKRNVRVKQVKPTFESLN 502
I Y++GG ASGF V ++ RLF + + V ++ V P SL+
Sbjct: 300 NDIAYIEGGTASGFYSVE-DQIYITRLFRLLKDKRVLLEPVLPDVSSLD 347
>SB_38607| Best HMM Match : Gelsolin (HMM E-Value=0.0024)
Length = 693
Score = 37.9 bits (84), Expect = 0.005
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 17/89 (19%)
Frame = +2
Query: 68 GLEIWRIENFEPVAVPKTQFGLFYSGDSYIVL---------NTTGDKDRLTWDI------ 202
G+ +W I + +P G F+SG+ Y++ T K R +
Sbjct: 220 GVTVWHINEYRHYELPNENHGHFHSGEGYVIRWAYFVMTDRIATDRKSRCRSTVAGRVRT 279
Query: 203 --HFWLGSRTSQDEAGAAAILTVNLDDEQ 283
FW G+ + +E GAAA++ V LD+E+
Sbjct: 280 AYFFWQGNDCTVNEKGAAAVMAVELDEER 308
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 37.9 bits (84), Expect = 0.005
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 17/89 (19%)
Frame = +2
Query: 68 GLEIWRIENFEPVAVPKTQFGLFYSGDSYIVL---------NTTGDKDRLTWDI------ 202
G+ +W I + +P G F+SG+ Y++ T K R +
Sbjct: 1775 GVTVWHINEYRHYELPNENHGHFHSGEGYVIRWAYFVMTDRIATDRKSRCRSTVAGRVRT 1834
Query: 203 --HFWLGSRTSQDEAGAAAILTVNLDDEQ 283
FW G+ + +E GAAA++ V LD+E+
Sbjct: 1835 AYFFWQGNDCTVNEKGAAAVMAVELDEER 1863
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 449 GKRNVRVKQVKPTFESLNNGDC 514
G+RN++ + ++P +S N+GDC
Sbjct: 1457 GRRNIQTRLIEPCQKSFNSGDC 1478
>SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 36.3 bits (80), Expect = 0.015
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 206 FWLGSRTSQDEAGAAAILTVNLDDEQFQGSAVQHREVQYYXSKEFLEYFSPAIRYLKGGH 385
FW G ++ +E GAAA++TV +D E+ +H + F Y + + GH
Sbjct: 197 FWQGHDSTVNEKGAAALMTVEIDSEKGPQITFKHTVTVRFDIDTFFIYRECSCFFYCDGH 256
Query: 386 ASG 394
A G
Sbjct: 257 ALG 259
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 34.7 bits (76), Expect = 0.046
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +3
Query: 90 RTSNRSPFRRLSSVSSTPGTPTLY*TPQAIRTV*HGTSISGSARGPARTKPARRPSSR*T 269
R++ RS R + STP TP+ TP I T +S GSARG A+T +
Sbjct: 206 RSTPRSRSRSRARTPSTPSTPSTPSTPSTITTSSRASS-RGSARGGAKTTKTTKKC---- 260
Query: 270 WTTNNSRDQR--YSTERSNITSPRSS*N 347
TT SR Q +T+ IT+ R S N
Sbjct: 261 -TTCKSRGQNGDTTTKTKCITTRRVSGN 287
>SB_54818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 302 QHREVQYYXSKEFLEYFSPAIRYLKGGHASGFXHVTINEGT----XKRLFXIKGKRNVRV 469
Q R VQY + FL F + L+GG +GF E T KR+F +KG ++
Sbjct: 38 QVRVVQYKEPEHFLRIFRGRLIILEGGKGAGF-RAGCEEDTYDHEGKRMFHVKGTTDLNA 96
Query: 470 KQVK 481
K ++
Sbjct: 97 KAIQ 100
>SB_49838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 31.5 bits (68), Expect = 0.43
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 206 FWLGSRTSQDEAGAAAILTVNLDDEQ 283
FW G ++ +E GAAA++TV +D E+
Sbjct: 37 FWQGHDSTVNEKGAAALMTVEIDSEK 62
>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
Length = 582
Score = 30.7 bits (66), Expect = 0.74
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +3
Query: 240 PARRPSSR*TWTTNNSRDQRYS-TERSNITSPRSS*NISHQPSAI*KADTPQASXT*RSM 416
P+ PSS ++ N RD R S R+N+ +S N+ PS+ D+P AS R
Sbjct: 116 PSSHPSSN-YMSSRNPRDSRNSPASRNNLRESPTSCNVRDSPSSRNPRDSP-ASRNPRDS 173
Query: 417 REQXN--DSSXSRVKETSALSR 476
N DS SR S SR
Sbjct: 174 PSSCNVRDSPSSRNPRDSPASR 195
>SB_31322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 265 HREDGRRAGFVLAGPRAEPEMDVPC*TVLIACGVQYNVGVPGVEETELSLRNGDRFEVLN 86
HR+ +R F PE D+P T + + V P +E E + N +RFE ++
Sbjct: 130 HRKSAQRGPFHRPRDLLHPEGDIPDNTTSKTSYITHEVSPPKKKEPEKYVPNPNRFETVS 189
>SB_13852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 846
Score = 29.5 bits (63), Expect = 1.7
Identities = 27/101 (26%), Positives = 42/101 (41%)
Frame = +3
Query: 57 AGSRVSKYGGLRTSNRSPFRRLSSVSSTPGTPTLY*TPQAIRTV*HGTSISGSARGPART 236
+G V++ RTS S S S+PGT TP A + + +SG+A
Sbjct: 682 SGQEVTRSHTGRTSRASGESPTSIYVSSPGTNMSESTPSAGQRL-----VSGAAEAALNA 736
Query: 237 KPARRPSSR*TWTTNNSRDQRYSTERSNITSPRSS*NISHQ 359
R +S+ W T + + R +S +SS N S +
Sbjct: 737 LRTGRVTSQAEWETGENSKKNRERSRERKSSGKSSENSSEK 777
>SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 28.3 bits (60), Expect = 4.0
Identities = 25/76 (32%), Positives = 32/76 (42%)
Frame = +3
Query: 87 LRTSNRSPFRRLSSVSSTPGTPTLY*TPQAIRTV*HGTSISGSARGPARTKPARRPSSR* 266
LR+S P +SV T P +RT S+ SA P+ A RP
Sbjct: 474 LRSSVEGPSSNKTSVEWPSSVRTSSERPLPVRTSAERPSLRTSAERPSLRTSAERPLPVR 533
Query: 267 TWTTNNSRDQRYSTER 314
T +T+ S R STER
Sbjct: 534 T-STDTSSSFRSSTER 548
>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 937
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Frame = +3
Query: 195 GTSISGSARGPARTKPARRPSSR*TWTTNNS-------RDQRY---STERSNITSPRS 338
GTS G AR PAR P +P+ T S ++ RY ST SNI P S
Sbjct: 583 GTSTEGPARPPARPPPTAKPAVNRLSPTRRSLPPVATHQEDRYRPGSTPNSNIPVPSS 640
>SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 674
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 282 CSSSKFTVRMAAAPASSWLVLEPSQKWMSHVRRSLSPVVFSTM 154
C F R+ W+ P++ S S+SPV FSTM
Sbjct: 295 CLKKDFIGRIVPLLVDCWIESNPAEMSTSLPSSSISPVAFSTM 337
>SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 660
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 280 TIPGISGTAPRGPILXVQGVPRIFLTSHPLF 372
T+ +SG A L V+G PRI L S P+F
Sbjct: 252 TVDSVSGMARALVTLKVRGAPRINLDSGPVF 282
>SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)
Length = 426
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 125 FGLFYSGDSYIVLNTTGDKDRLTWDI 202
+GL +S DS +L +GDK W+I
Sbjct: 209 YGLSWSDDSKFILTASGDKSCKIWNI 234
>SB_13482| Best HMM Match : Herpes_gI (HMM E-Value=0.96)
Length = 461
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 237 KPARRPSSR*TWTTNNSRDQRYSTERSNIT 326
K + R S TW+TN+ DQR + S+IT
Sbjct: 202 KKSVRRGSMGTWSTNSYEDQRILSSTSSIT 231
>SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
Length = 669
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 106 RRSEDSVRSLLLRGLLHCTEHHRR*GPSNMGHPFLAR 216
R ED++ SL + + +CT H R S++ H L R
Sbjct: 32 RAREDAIESLQVSHITYCTVHRRNRVASSVTHHVLHR 68
>SB_46433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 245 AAAILTVNLDDEQFQGSAVQHREVQYYXSKEFLEYF-SPAIRYLK 376
AA L + L+ E+FQG+ +R+ S + +EYF +PA + K
Sbjct: 165 AAQKLQMFLESEEFQGALQLNRDAATTKSSDKVEYFINPAFQLEK 209
>SB_49759| Best HMM Match : bZIP_1 (HMM E-Value=0.93)
Length = 316
Score = 27.1 bits (57), Expect = 9.2
Identities = 25/95 (26%), Positives = 39/95 (41%)
Frame = +3
Query: 57 AGSRVSKYGGLRTSNRSPFRRLSSVSSTPGTPTLY*TPQAIRTV*HGTSISGSARGPART 236
+G V++ RTS S S S+PGT TP A + + +SG+A
Sbjct: 152 SGQEVTRSHTGRTSRASGESPTSIYVSSPGTNMSESTPTAGQRL-----VSGAAEAALNA 206
Query: 237 KPARRPSSR*TWTTNNSRDQRYSTERSNITSPRSS 341
R +S+ W T + + R +S +SS
Sbjct: 207 LRTGRVTSQAEWETGENSKKNRERSRERKSSGKSS 241
>SB_20599| Best HMM Match : UPF0172 (HMM E-Value=7.2)
Length = 480
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +2
Query: 128 GLFYSGDSYIVLNTTGDKDRLTWDIHFWLGSRTSQDEAGAAAI 256
G SG +V+ T G+KD +D W EAG +
Sbjct: 303 GACASGGWTLVMKTDGNKDTFRYDSTLWTNKDEFNPEAGKTGL 345
>SB_6195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +3
Query: 30 KYTKHSRMPAGSRVSK 77
KYTKHSR AGSR K
Sbjct: 44 KYTKHSRSIAGSREKK 59
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,801,328
Number of Sequences: 59808
Number of extensions: 306145
Number of successful extensions: 843
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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