Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30088
         (854 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39917| Best HMM Match : APH (HMM E-Value=0.00074)                   74   2e-13
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   2e-10
SB_13167| Best HMM Match : APH (HMM E-Value=1e-04)                     62   4e-10
SB_19804| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.39 
SB_47098| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)                  30   2.8  
SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0)                    29   3.6  
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_39917| Best HMM Match : APH (HMM E-Value=0.00074)
          Length = 407

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 10/179 (5%)
 Frame = +1

Query: 70  LKLTGNMTDAKLLLEPGQVIRPIIDHEQVKLLAERLYGIS-VLDLTELNGYDDKNYKLTE 246
           L+  G +    L++   Q  RP    E  K LA+ LY  + VL++ E   + D+N+ +  
Sbjct: 33  LQEVGRVGMKHLIMSKRQPRRPNASLETAKTLAKDLYNFTDVLEMREFKSFFDRNFYIRG 92

Query: 247 DPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMNFLATRSVTCPK--PVRN-- 414
               +N    N  P  +VLKI NS+DS+N  V +A+N++M  L  R   CP+  P RN  
Sbjct: 93  QVRTENNGNPN-KPQEFVLKIHNSLDSENEEVRDAENQLMRMLRDRGFPCPEIIPTRNGQ 151

Query: 415 IFG--HLHSIEDLGGKKHAVRLLEYVPGELLKNCPLSEA---LLYQLGEFVANLDNKLQ 576
           +    HL + +        VRLL +V G+ L +   S+    L+Y LG+F+ +    ++
Sbjct: 152 LMEKIHLPASDGQNADGCVVRLLSFVYGQELDSLDKSDVTPELMYTLGKFIGDASKAMK 210


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 27/176 (15%)
 Frame = +1

Query: 130 RPIIDHEQVKLLAERLYGI-----SVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYG 294
           RP +  EQ   L++ +YG+     SV  + EL  YDD+N+ L     ++N      +  G
Sbjct: 28  RPKVTCEQAIHLSKNIYGVHVPSTSVSLVKELISYDDRNFYL--QGFIQNEEQEPANLRG 85

Query: 295 YVLKIMNSIDSQNVGVVEAQNEIMNFLATRSVTCPKPVRNIFGHLHSI------------ 438
           ++LK+ N   S++  +++  ++++ +L+ R +TCP P  +  G LH++            
Sbjct: 86  FLLKVSNPAFSKSQSILKGNSDLLLYLSKRDITCPVPYSSRNGELHTMCNFSGQLGNATA 145

Query: 439 ----------EDLGGKKHAVRLLEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQ 576
                     ED      AVRL  YV G LL+   L+E +LY LG  VA++   ++
Sbjct: 146 CGSYKVLSKDEDNADGACAVRLFSYVSGSLLEKVALTEDVLYDLGASVASMHKAMK 201


>SB_13167| Best HMM Match : APH (HMM E-Value=1e-04)
          Length = 374

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
 Frame = +1

Query: 130 RPIIDHEQVKLLAERLYGIS-VLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYG-YVL 303
           RP +   +   LA  L+ I+ + ++ EL    D+N+ +           T     G +VL
Sbjct: 8   RPEVSCSEAGHLARSLFCITPITEVKELISTSDRNFFI-------EGFSTAFQASGKFVL 60

Query: 304 KIMNSIDSQNVGVVEAQNEIMNFLATRSVTCPKPVRN------------IFGHLHSIEDL 447
           KI+NS DS N  ++ A+N  +++L  R   CP  ++             + G +      
Sbjct: 61  KILNSSDSSNEELIYAENAAIDYLRERGYPCPMVLKAWNDKRLAKADLPVRGSIKGNGKD 120

Query: 448 GGKKHAVRLLEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQADEHKA 594
           G ++  +RLLE VPGE L +   +  +LYQ+GEF+ ++   LQ   H A
Sbjct: 121 GTERCIIRLLELVPGETLASISTTSKMLYQVGEFIGSVSGSLQGFSHLA 169


>SB_19804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 434 LSRTWEARNTP*DCWSTCRESS*RTVPCPKLSCISSENLSLIWITNCRQTSIR 592
           +S+TW         W   R  S R   C KL+C+S   LSL W+   ++T +R
Sbjct: 441 VSKTWNGERGT-GIWE--RVISGRAQRCSKLTCVSLALLSLKWMRRAKETHVR 490


>SB_47098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 488 RESS*RTVPCPKLSCISSENLSLIWITNCRQTSIR 592
           R  S R  PC  L+C+S   LSL W+   ++  +R
Sbjct: 494 RVISGRAQPCSNLTCVSLALLSLKWMRRAKEAHVR 528


>SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 214 GYDDKNYK-LTEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEA 351
           G+ DK  + LT DP   +  ++  SP  ++  +++ I  QNV +VE+
Sbjct: 262 GFGDKAIEALTRDPKESDTNVSRASPDSHLQTVISEIREQNVELVES 308


>SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)
          Length = 493

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 442 DLGGKKHAVRLLEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQADEHKAHL 600
           D+G      + L+ V GELLKNC +   +L +L +  A +D+ +    H  HL
Sbjct: 370 DVGRDVKNQQQLDDVRGELLKNCEV--LVLAELDDLRAPMDDNMVFMHHPGHL 420


>SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0)
          Length = 1040

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
 Frame = +1

Query: 232 YKLTEDPNMKNPLITNHSPYGYVLKIMN-SIDSQNVGVVEAQNEI-MNFLATRSVTC-PK 402
           + LT DP+  NPL+     Y  ++K +N +I      + +  N++  N   T+   C P 
Sbjct: 400 FDLTADPSESNPLVPTKPHYNEIMKHINKAIKHHQDTIAQVPNQLSKNICLTKMEACRPC 459

Query: 403 PVRNIFGHLHSIEDLGGKKHAVRLLEYVPGEL 498
               +F  L     L   +    +L ++  +L
Sbjct: 460 LSCYVFALLVIFSSLASSQKKPNILIFIVDDL 491


>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/66 (21%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +2

Query: 638  RQGQSQAAAYQRYREYDSVVVEIHRTVVCMRAAEMP--PADHEFSRKESSLFFFPT*TES 811
            R+G+ +    +RY++  +  + + + V+  + AE P    D E +RKE+ +  +    + 
Sbjct: 865  REGEKKEQLEERYKQLLNEYIALRKEVIEAKKAEKPDREKDEELNRKEALIHKYMRREKG 924

Query: 812  LERLYQ 829
            ++R+ +
Sbjct: 925  MQRMLE 930


>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
 Frame = +1

Query: 454 KKHAVRLLEYVPGELLKNCPLSEALLYQL---GEFVA--NLDNKLQADEHKAHLMVSGYR 618
           + HA  L + +  ELL   P +  +L +L   G  +A  N  NK+ + + +      G+ 
Sbjct: 687 ESHAEFLCQLI-WELLCILPTNHTVLNRLKFFGHTLASENAPNKVDSSKPEEEHSYEGFS 745

Query: 619 RPWTSATPGAEPSRCLPKIQRI*F--RRSGNTQN 714
            PW S      P + L  +Q I F  R   +TQN
Sbjct: 746 VPWESILDPKHPHKLLYSLQVIHFIHRAEDDTQN 779


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,933,584
Number of Sequences: 59808
Number of extensions: 553095
Number of successful extensions: 2553
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2550
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)