Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30080X
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)              179   2e-45
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)             176   8e-45
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)             175   2e-44
SB_56| Best HMM Match : Actin (HMM E-Value=0)                         175   2e-44
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                      175   2e-44
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)              173   8e-44
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)                157   4e-39
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)                 61   6e-10
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)                  54   1e-07
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   1e-05
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_58885| Best HMM Match : WD40 (HMM E-Value=0.00016)                  29   3.2  
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        29   3.2  
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.2  
SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.3  
SB_10793| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_34211| Best HMM Match : DUF1103 (HMM E-Value=6.4)                   27   9.6  
SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)                  27   9.6  

>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score =  179 bits (435), Expect = 2e-45
 Identities = 82/91 (90%), Positives = 88/91 (96%)
 Frame = -3

Query: 531 CNVAIRKDLYAYSVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGS 352
           C+V IRKDLYA +VMSGGTTMYPG+ADRMQKEI+ALAPST+KIKIIAPPERKYSVWIGGS
Sbjct: 259 CDVDIRKDLYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGS 318

Query: 351 ILASLSTFQQMWISKEEYDESGPGIVHRKCF 259
           ILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 319 ILASLSTFQQMWISKQEYDESGPAIVHRKCF 349


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score =  176 bits (429), Expect = 8e-45
 Identities = 81/91 (89%), Positives = 87/91 (95%)
 Frame = -3

Query: 531 CNVAIRKDLYAYSVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGS 352
           C+V IRKDLYA +V+SGGTTMYPGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGS
Sbjct: 248 CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGS 307

Query: 351 ILASLSTFQQMWISKEEYDESGPGIVHRKCF 259
           ILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 308 ILASLSTFQQMWISKQEYDESGPAIVHRKCF 338


>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score =  175 bits (426), Expect = 2e-44
 Identities = 80/91 (87%), Positives = 87/91 (95%)
 Frame = -3

Query: 531 CNVAIRKDLYAYSVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGS 352
           C+V IRKDLYA +V+SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGS
Sbjct: 286 CDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGS 345

Query: 351 ILASLSTFQQMWISKEEYDESGPGIVHRKCF 259
           ILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 346 ILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score =  175 bits (426), Expect = 2e-44
 Identities = 80/91 (87%), Positives = 87/91 (95%)
 Frame = -3

Query: 531 CNVAIRKDLYAYSVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGS 352
           C+V IRKDLYA +V+SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGS
Sbjct: 285 CDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGS 344

Query: 351 ILASLSTFQQMWISKEEYDESGPGIVHRKCF 259
           ILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 345 ILASLSTFQQMWISKQEYDESGPSIVHRKCF 375


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score =  175 bits (425), Expect = 2e-44
 Identities = 80/91 (87%), Positives = 87/91 (95%)
 Frame = -3

Query: 531 CNVAIRKDLYAYSVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGS 352
           C+V IRKDLYA +V+SGG+TMYPGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGS
Sbjct: 286 CDVDIRKDLYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGS 345

Query: 351 ILASLSTFQQMWISKEEYDESGPGIVHRKCF 259
           ILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 346 ILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score =  173 bits (421), Expect = 8e-44
 Identities = 79/91 (86%), Positives = 87/91 (95%)
 Frame = -3

Query: 531 CNVAIRKDLYAYSVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGS 352
           C+V IRKDLYA +V+SGG+TM+PGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGS
Sbjct: 285 CDVDIRKDLYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGS 344

Query: 351 ILASLSTFQQMWISKEEYDESGPGIVHRKCF 259
           ILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 345 ILASLSTFQQMWISKQEYDESGPSIVHRKCF 375


>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
          Length = 149

 Score =  157 bits (382), Expect = 4e-39
 Identities = 71/91 (78%), Positives = 82/91 (90%)
 Frame = -3

Query: 531 CNVAIRKDLYAYSVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGS 352
           C+V IRKDLY+  V+SGG+TM+PGIADRMQKEI  LA +++K+K+IAPPERKYSVWIGGS
Sbjct: 59  CDVDIRKDLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGS 118

Query: 351 ILASLSTFQQMWISKEEYDESGPGIVHRKCF 259
           ILASLSTFQQMWI+KEEY E GP IVHRKCF
Sbjct: 119 ILASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149


>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
          Length = 543

 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 16/107 (14%)
 Frame = -3

Query: 531 CNVAIRKDLYAYSVMSGGTTMYPGIADRMQKEITA----------------LAPSTIKIK 400
           C + +R+ LY   V+SGG+TM+     R+Q++I                  + P  I+ +
Sbjct: 234 CPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQ 293

Query: 399 IIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 259
           +I+   ++Y+VW GGS+LAS   F  +  +K +YDE GP I     F
Sbjct: 294 VISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340


>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
          Length = 240

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 23/67 (34%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
 Frame = -3

Query: 528 NVAIRKDLYAYSVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIA---PPERKYSVWIG 358
           ++ IR  L+   +++GG T+  G  +R+ +E+ +  P ++++K+I+     E++++ WIG
Sbjct: 164 DIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIG 223

Query: 357 GSILASL 337
           GSILASL
Sbjct: 224 GSILASL 230


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = -3

Query: 513 KDLYAYSVMSGGTTMYPGIADRMQKEITA-LAPSTIKIKIIAPPERKYSVWIGGSILAS- 340
           K LY   V+ G T+         Q  +TA       KI+I  PP RK+ V++GG++LA  
Sbjct: 322 KQLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMVFMGGAVLADI 381

Query: 339 LSTFQQMWISKEEYDESG 286
           +      W++++EY+E G
Sbjct: 382 MKDKDSFWMTRKEYEEKG 399


>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
 Frame = -3

Query: 531 CNVAIRKDLYAYSVMSGGTTMYPGIADRMQKEITALAPST-------IK-IKIIAPP-ER 379
           C +  RK L    V+ GGT M PG   R+ +EI  L  S        IK +K+  PP   
Sbjct: 69  CPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNA 128

Query: 378 KYSVWIGGSILASLSTFQQMWISKEEYDE 292
             + W+GG+I  SL        ++E Y +
Sbjct: 129 NITAWLGGAIFGSLEVLADRSTTRERYQQ 157


>SB_58885| Best HMM Match : WD40 (HMM E-Value=0.00016)
          Length = 446

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -3

Query: 516 RKDLYAYSVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIG-GSILAS 340
           RK  Y Y ++ G  T  PGI  R ++ +        K K+   P+ K+ V++G    +  
Sbjct: 249 RKYFYVYDMIKGQVTRIPGIRGRHERNLE-------KFKV--SPDGKHLVFLGDNGYMIL 299

Query: 339 LSTFQQMWI 313
           LS+  + W+
Sbjct: 300 LSSKTKQWV 308


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 460 YRRQDAEGDHRPRALDHQDQDHRSPREE 377
           +RRQDA  DHR +  DH  QD   PR++
Sbjct: 664 HRRQDA--DHRRQDADHHRQDVVHPRQD 689


>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 350 MDPPIHTEYFLSGGAMILILMVEGARAVISFCILSAIPGYMV-VPPD 487
           +DPP+  +Y L+GG  ++   ++       FCI     G++V  PP+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCIFQ---GFVVPTPPE 801


>SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1104

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 246 PRDPGAVWCCARPSSERNRQYVVPSDT*ELNI*SNAIYSNVIYCKN 109
           P DPG++W    PS E  ++Y  P DT  ++   + +  N+  C N
Sbjct: 262 PNDPGSLWNFVSPSME--KRYGNPRDTDTID---DTLMGNLAKCYN 302


>SB_10793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = -2

Query: 529 QRRHP*GPVRLLRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDRWIH 350
           QR HP    ++  H++  HH PRY     +    P         H  PR     MD+  H
Sbjct: 289 QRTHPTPWTKV--HIK--HHGPRYTSNTMDQGTHPTPWTKVHIQHYGPRYTSNTMDQGTH 344

Query: 349 P 347
           P
Sbjct: 345 P 345


>SB_34211| Best HMM Match : DUF1103 (HMM E-Value=6.4)
          Length = 126

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 457 RRQDAEGDHRPRALDHQDQDHRSPREEVLRMDRWIHPGFP 338
           RRQ     HR R  D +D+D R      L  DR+ +  +P
Sbjct: 4   RRQGTATIHRYRQSDLRDRDRRRVLPRFLEQDRFDNSDYP 43


>SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)
          Length = 352

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 163 SGITRYNVLTVAFRTRTSTTPHSTGVT 243
           +GIT  N++T A  T TSTT  +  VT
Sbjct: 294 NGITNTNIITTATTTTTSTTISTITVT 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,460,958
Number of Sequences: 59808
Number of extensions: 290595
Number of successful extensions: 894
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)