Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30074X
(372 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05) 33 0.098
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 31 0.23
SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7) 29 1.6
SB_11573| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1
SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92) 28 2.1
SB_16310| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036) 27 3.7
SB_25898| Best HMM Match : rve (HMM E-Value=1) 27 3.7
SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4) 27 3.7
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 4.9
SB_48760| Best HMM Match : bZIP_1 (HMM E-Value=0.95) 27 4.9
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_52312| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_45106| Best HMM Match : Adeno_E3B (HMM E-Value=1.1) 26 8.5
SB_40672| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_12835| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_20348| Best HMM Match : Planc_extracel (HMM E-Value=5.4) 26 8.5
>SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)
Length = 322
Score = 32.7 bits (71), Expect = 0.098
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 241 NIYTLGI*CFYERVFCNVVDIYLYYLLPWSMYRECERVRRMH 116
N YT+ I C+Y + C V +YL++ L + +ECE H
Sbjct: 158 NTYTILILCYYPAILCIVKPVYLFFGL--GVDKECESCYSFH 197
>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
Length = 428
Score = 31.5 bits (68), Expect = 0.23
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = -1
Query: 279 LNMQFFFFVSQTKIYTL*GSNVFTKGY-FVTLLI--FIY-IIYYRGVCIESASECVGCTC 112
L++ FFF + T I T +V +GY ++ L + +Y ++YY G S +E +
Sbjct: 350 LDVIFFFICAITMIVTY---SVLLRGYKYMELSLDKLVYNLVYYFGATKYSVTEIMKIVL 406
Query: 111 AREHRRDTPPTSAPHTRTCTPR 46
HRR+ + H +C PR
Sbjct: 407 CSIHRRNVYVSLYIHLLSCAPR 428
>SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7)
Length = 488
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 142 ECERVRRMHVRARAPPRHAPHLR 74
+CE V R H+ R+PP + P L+
Sbjct: 423 QCESVARKHMPRRSPPAYKPQLK 445
>SB_11573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 157 WSMYRECERVRRMHVRARAPPRHAP 83
WSM+ EC + R+ V +R PP +P
Sbjct: 146 WSMFNECFPLIRVKVSSRDPPYMSP 170
>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
Length = 806
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 126 VGCTCAREHRRDTPPTSAPHTRTCTPRTLHLTS 28
V + + ++RR +P + +PH+ T TP +TS
Sbjct: 653 VSSSASSKNRRSSPVSRSPHSTTGTPNATGITS 685
>SB_16310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 157 WSMYRECERVRRMHVRARAPPRHAP 83
WSM+ EC + R+ V +R PP +P
Sbjct: 12 WSMFNECFPLIRVKVSSRDPPYMSP 36
>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
Length = 1136
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 157 TVINNINKYQQRYKIPFRKNIRSLKCI 237
T++ + N+Y Q Y+ F SLKCI
Sbjct: 179 TMVTSENEYVQEYRARFEIKTNSLKCI 205
>SB_25898| Best HMM Match : rve (HMM E-Value=1)
Length = 714
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 148 TYSTVINNINKYQQRYKIPFRKNIRSLKCIYFCLAYKKK 264
T + +INN+NK RY IP + N + K + KK
Sbjct: 582 TATCIINNLNKILARYGIPDQSNGAAEKAVQTAKRILKK 620
>SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4)
Length = 263
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 157 TVINNINKYQQRYKIPFRKNIRSLKCI 237
T++ + N+Y Q Y+ F SLKCI
Sbjct: 179 TMVTSENEYVQEYRARFEIKTNSLKCI 205
>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1980
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 132 ECVG--CTCAREHRRDTPPTSAPHTRTCTPRTLHLTS 28
+C G C C +H ++TP T TC P ++H+ S
Sbjct: 530 QCYGKECWCVDKHGQETPGTRTTGLITC-PASVHVLS 565
>SB_48760| Best HMM Match : bZIP_1 (HMM E-Value=0.95)
Length = 221
Score = 27.1 bits (57), Expect = 4.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 160 VINNINKYQQRYKIPFRKNIRSLKCI 237
++ + N+Y+Q Y+ F SLKCI
Sbjct: 1 MVTSENEYEQEYRARFEIKTNSLKCI 26
>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -1
Query: 129 CVGCTCAREHRRDTPPTSAPHTRTCTPRTLHLTSNKA 19
C+ T PPT+AP T T P T TS A
Sbjct: 772 CLASTSTSAATTTAPPTTAPPTTTKEPTTDASTSTSA 808
>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 26.6 bits (56), Expect = 6.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 117 TCAREHRRDTPPTSAPH 67
+C +HR D PPTS H
Sbjct: 359 SCPLDHREDAPPTSTLH 375
>SB_52312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 690
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 277 KYAILFFCKPNKNIYTLGI*C 215
K A+L FCK N YTL C
Sbjct: 221 KNAVLLFCKKKGNFYTLHTTC 241
>SB_45106| Best HMM Match : Adeno_E3B (HMM E-Value=1.1)
Length = 234
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +3
Query: 261 KRIAYL-VFYRFSLIINS*C-IKSYFFNEKSEQSV 359
KR+A L + + S ++ S C I +Y FN+K EQ V
Sbjct: 88 KRLAILAILFCLSTLVCSACLIAAYVFNDKVEQGV 122
>SB_40672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 258
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 178 YLYYLLPWSMYRECERVRRMHVRARAPPRH 89
Y Y PW +Y C +V +V A PP H
Sbjct: 228 YRYVRTPWLLYHRCIQV-CTYVMASLPPVH 256
>SB_12835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 117 TCAREHRRDTPPTSAPHTRTCTPRTLHLTSNKAIS 13
T AR HR P A R C+ TL+L A+S
Sbjct: 235 TDARRHRDQDAPADARTCRDCSAITLNLPVQLALS 269
>SB_20348| Best HMM Match : Planc_extracel (HMM E-Value=5.4)
Length = 148
Score = 26.2 bits (55), Expect = 8.5
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = -1
Query: 195 VTLLIFIYIIYYRGVCIESASECVGCTCAREHRRDTPPTSAPHTRTCTPRTLHLTS 28
+TL+IF+ +YY G CV AR S H RT + R LHLT+
Sbjct: 62 ITLVIFLTALYYAGF----FGLCVS-AWARHMLGARSEISRYHYRTRSARGLHLTA 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,400,347
Number of Sequences: 59808
Number of extensions: 199024
Number of successful extensions: 652
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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