Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30059X
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)              165   2e-41
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)             162   1e-40
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)             161   3e-40
SB_56| Best HMM Match : Actin (HMM E-Value=0)                         161   3e-40
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                      161   4e-40
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)              159   1e-39
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)                143   8e-35
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)                 54   8e-08
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)                  50   1e-06
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   8e-04
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        29   2.6  
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   2.6  
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_34211| Best HMM Match : DUF1103 (HMM E-Value=6.4)                   27   8.0  
SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)                  27   8.0  

>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score =  165 bits (400), Expect = 2e-41
 Identities = 75/80 (93%), Positives = 79/80 (98%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 298
           NTVMSGGTTMYPG+ADRMQKEI+ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 270 NTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 329

Query: 297 WISKEEYDESGPGIVHRKCF 238
           WISK+EYDESGP IVHRKCF
Sbjct: 330 WISKQEYDESGPAIVHRKCF 349


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score =  162 bits (394), Expect = 1e-40
 Identities = 74/80 (92%), Positives = 78/80 (97%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 298
           NTV+SGGTTMYPGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 259 NTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 318

Query: 297 WISKEEYDESGPGIVHRKCF 238
           WISK+EYDESGP IVHRKCF
Sbjct: 319 WISKQEYDESGPAIVHRKCF 338


>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score =  161 bits (391), Expect = 3e-40
 Identities = 73/80 (91%), Positives = 78/80 (97%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 298
           NTV+SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 297 NTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 356

Query: 297 WISKEEYDESGPGIVHRKCF 238
           WISK+EYDESGP IVHRKCF
Sbjct: 357 WISKQEYDESGPSIVHRKCF 376


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score =  161 bits (391), Expect = 3e-40
 Identities = 73/80 (91%), Positives = 78/80 (97%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 298
           NTV+SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 296 NTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 355

Query: 297 WISKEEYDESGPGIVHRKCF 238
           WISK+EYDESGP IVHRKCF
Sbjct: 356 WISKQEYDESGPSIVHRKCF 375


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score =  161 bits (390), Expect = 4e-40
 Identities = 73/80 (91%), Positives = 78/80 (97%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 298
           NTV+SGG+TMYPGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 297 NTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 356

Query: 297 WISKEEYDESGPGIVHRKCF 238
           WISK+EYDESGP IVHRKCF
Sbjct: 357 WISKQEYDESGPSIVHRKCF 376


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score =  159 bits (386), Expect = 1e-39
 Identities = 72/80 (90%), Positives = 78/80 (97%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 298
           NTV+SGG+TM+PGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 296 NTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 355

Query: 297 WISKEEYDESGPGIVHRKCF 238
           WISK+EYDESGP IVHRKCF
Sbjct: 356 WISKQEYDESGPSIVHRKCF 375


>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
          Length = 149

 Score =  143 bits (346), Expect = 8e-35
 Identities = 64/80 (80%), Positives = 73/80 (91%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 298
           N V+SGG+TM+PGIADRMQKEI  LA +++K+K+IAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 70  NCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQM 129

Query: 297 WISKEEYDESGPGIVHRKCF 238
           WI+KEEY E GP IVHRKCF
Sbjct: 130 WIAKEEYHEYGPPIVHRKCF 149


>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
          Length = 543

 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 16/96 (16%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITA----------------LAPSTIKIKIIAPPERKYSV 346
           N V+SGG+TM+     R+Q++I                  + P  I+ ++I+   ++Y+V
Sbjct: 245 NIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAV 304

Query: 345 WIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 238
           W GGS+LAS   F  +  +K +YDE GP I     F
Sbjct: 305 WFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340


>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
          Length = 240

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 20/57 (35%), Positives = 40/57 (70%), Gaps = 3/57 (5%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIA---PPERKYSVWIGGSILASL 316
           + +++GG T+  G  +R+ +E+ +  P ++++K+I+     E++++ WIGGSILASL
Sbjct: 174 SVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = -3

Query: 387 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 265
           KI+I  PP RK+ V++GG++LA  +      W++++EY+E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399


>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITALAPST-------IK-IKIIAPP-ERKYSVWIGGSIL 325
           N V+ GGT M PG   R+ +EI  L  S        IK +K+  PP     + W+GG+I 
Sbjct: 80  NIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGGAIF 139

Query: 324 ASLSTFQQMWISKEEYDE 271
            SL        ++E Y +
Sbjct: 140 GSLEVLADRSTTRERYQQ 157


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 439 YRRQDAEGDHRPRALDHQDQDHRSPREE 356
           +RRQDA  DHR +  DH  QD   PR++
Sbjct: 664 HRRQDA--DHRRQDADHHRQDVVHPRQD 689


>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 329 MDPPIHTEYFLSGGAMILILMVEGARAVISFCILSAIPGYMV-VPPD 466
           +DPP+  +Y L+GG  ++   ++       FCI     G++V  PP+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCIFQ---GFVVPTPPE 801


>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITALAP 397
           N  ++GG TMY     R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158


>SB_34211| Best HMM Match : DUF1103 (HMM E-Value=6.4)
          Length = 126

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 436 RRQDAEGDHRPRALDHQDQDHRSPREEVLRMDRWIHPGFP 317
           RRQ     HR R  D +D+D R      L  DR+ +  +P
Sbjct: 4   RRQGTATIHRYRQSDLRDRDRRRVLPRFLEQDRFDNSDYP 43


>SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)
          Length = 352

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 142 SGITRYNVLTVAFRTRTSTTPHSTGVT 222
           +GIT  N++T A  T TSTT  +  VT
Sbjct: 294 NGITNTNIITTATTTTTSTTISTITVT 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,125,392
Number of Sequences: 59808
Number of extensions: 262588
Number of successful extensions: 857
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)