Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30057
(631 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 5e-10
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.021
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.063
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2) 29 2.4
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0) 29 4.1
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) 29 4.1
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_30649| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-24) 27 9.5
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 9.5
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 27 9.5
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 61.7 bits (143), Expect = 5e-10
Identities = 30/37 (81%), Positives = 31/37 (83%)
Frame = -3
Query: 113 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
SWI RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3
Query: 98 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3
Query: 98 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3
Query: 98 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3
Query: 98 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 42
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -3
Query: 95 RTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
RT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVL 59
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -3
Query: 95 RTSAKAFAKGVFINQERKLEVRRRLDT 15
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/33 (66%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
Frame = -3
Query: 98 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
R+T+ ++ AK VFINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVL 40
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -2
Query: 120 VKFLDRRKTNISESICQRCFHQSRTKV 40
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = -3
Query: 98 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
R+T+ ++ + VFINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVL 40
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -2
Query: 120 VKFLDRRKTNISESICQRCFHQSRTKV 40
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -2
Query: 120 VKFLDRRKTNISESICQRCFHQSRTKV 40
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 36.3 bits (80), Expect = 0.021
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -3
Query: 98 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -2
Query: 120 VKFLDRRKTNISESICQRCFHQSRTKV 40
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 36.3 bits (80), Expect = 0.021
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -3
Query: 98 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 36.3 bits (80), Expect = 0.021
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -3
Query: 98 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 117 KFLDRRKTNISESICQRCFHQSRTKV 40
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 34.7 bits (76), Expect = 0.063
Identities = 21/43 (48%), Positives = 23/43 (53%)
Frame = -1
Query: 541 PRTN*RASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVGAP 413
PR + RASL AY K+VAVKKLVV F VG P
Sbjct: 13 PRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 33.1 bits (72), Expect = 0.19
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = -1
Query: 553 LNILPRTN*RASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVGAP 413
++++ R + RASL AY K+VAVKKLVV F VG P
Sbjct: 56 MHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/38 (50%), Positives = 20/38 (52%)
Frame = -1
Query: 526 RASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVGAP 413
RASL AY K+VAVKKLVV F VG P
Sbjct: 5 RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42
>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
Length = 111
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 478 YTKIVAVKKLVVAFVRRAVGAP 413
Y K+VAVKKLVV F VG P
Sbjct: 88 YIKVVAVKKLVVGFRDGTVGPP 109
>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 478 YTKIVAVKKLVVAFVRRAVGAP 413
Y K+VAVKKLVV F VG P
Sbjct: 44 YIKVVAVKKLVVGFRDGTVGPP 65
>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 478 YTKIVAVKKLVVAFVRRAVGAP 413
Y K+VAVKKLVV F VG P
Sbjct: 89 YIKVVAVKKLVVGFRDGTVGPP 110
>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 478 YTKIVAVKKLVVAFVRRAVGAP 413
Y K+VAVKKLVV F VG P
Sbjct: 17 YIKVVAVKKLVVGFRDGTVGPP 38
>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
Length = 663
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 228 RNIQAAFLARFEHSNLFK--VKLSAHLDTHRRAPR*DFDIEPAFFRTPAHRRYA 383
+N + LAR+ + +F ++ AHLDT RR P D+ R RYA
Sbjct: 573 KNPEPELLARWYQTGVFTPFLRAHAHLDTKRREPWLFDDVYKNVIRDALRTRYA 626
>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
Length = 203
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 440 CNYELFNRNNFSIRYWSWNYRGCWH 514
C + RN +RYW W R C H
Sbjct: 91 CEVTVIARNILPVRYWIWLSRKCGH 115
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 181 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 71
Q EV +++ GH Y C GE++ S++D H+ +P
Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 377 ICSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYW-SWNY 499
I S S R+RCT S + KC + + F W S+NY
Sbjct: 139 ISSGYYGRSYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180
>SB_30649| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-24)
Length = 463
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +2
Query: 365 GSPTICSANVSVSPRMRCTDSAAHKCNYELFNRN---NFSIRYWSWNYRGCWHQTCPSI 532
GSP + A V S C++ H+C + + N + IRY C +TC ++
Sbjct: 271 GSPLLMVARVLASLEQECSNMEKHRCLTAVLHPNTNTDSHIRYRPVQTEICGKKTCENL 329
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 102 DDPRISPLTSQYEC 143
DDPR+SP + QY C
Sbjct: 241 DDPRVSPTSQQYAC 254
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 618 KVVTKNTDTGLLRGLVIGISTL 553
K K T+TGL+ GLV+GI +L
Sbjct: 2826 KRAPKETNTGLIAGLVVGIISL 2847
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,564,294
Number of Sequences: 59808
Number of extensions: 358784
Number of successful extensions: 901
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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