Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30041X
(402 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 1e-17
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 1e-17
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 1e-17
SB_56| Best HMM Match : Actin (HMM E-Value=0) 86 1e-17
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 86 1e-17
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 1e-17
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 83 1e-16
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 40 6e-04
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 31 0.35
SB_54442| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37) 27 5.7
SB_46128| Best HMM Match : VQ (HMM E-Value=4.6) 27 7.6
SB_56910| Best HMM Match : ATP-synt_E_2 (HMM E-Value=5.4) 27 7.6
SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_28298| Best HMM Match : IncA (HMM E-Value=0.32) 26 10.0
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 26 10.0
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 85.8 bits (203), Expect = 1e-17
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = -1
Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
KYSVWIGGSILASLSTFQQMWISK+EY+ESGP IVHRKCF
Sbjct: 299 KYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 85.8 bits (203), Expect = 1e-17
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = -1
Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
KYSVWIGGSILASLSTFQQMWISK+EY+ESGP IVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 85.8 bits (203), Expect = 1e-17
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = -1
Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
KYSVWIGGSILASLSTFQQMWISK+EY+ESGP IVHRKCF
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 85.8 bits (203), Expect = 1e-17
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = -1
Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
KYSVWIGGSILASLSTFQQMWISK+EY+ESGP IVHRKCF
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 85.8 bits (203), Expect = 1e-17
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = -1
Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
KYSVWIGGSILASLSTFQQMWISK+EY+ESGP IVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 85.8 bits (203), Expect = 1e-17
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = -1
Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
KYSVWIGGSILASLSTFQQMWISK+EY+ESGP IVHRKCF
Sbjct: 310 KYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 82.6 bits (195), Expect = 1e-16
Identities = 36/40 (90%), Positives = 38/40 (95%)
Frame = -1
Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
KYSVWIGGSILASLSTFQQMWI+KEEY+E GP IVHRKCF
Sbjct: 110 KYSVWIGGSILASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 40.3 bits (90), Expect = 6e-04
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -1
Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
+Y+VW GGS+LAS F + +K +Y+E GP I F
Sbjct: 301 RYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 31.1 bits (67), Expect = 0.35
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 395 PYGSVDPSWLPCPPSSRCG 339
P G+ P W+ CPP S CG
Sbjct: 775 PSGASRPDWIECPPGSYCG 793
>SB_54442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.5 bits (58), Expect = 4.3
Identities = 20/72 (27%), Positives = 29/72 (40%)
Frame = +1
Query: 181 QFSGITRYNVLTVAFRTRTSTTPHSTGVTRPRCLEALAVDDAGAGLVVFLLRNPHLLEGG 360
Q++ +T N++ RTST T+ + D A +LL L E
Sbjct: 25 QYAALTSCNLIGQINNIRTSTQRTRRIETKELLCRTKIIGDKAAA---YLLIKKALKETR 81
Query: 361 QGSQDGSTDPYG 396
G +DG D YG
Sbjct: 82 NGYEDGDVDDYG 93
>SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)
Length = 352
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 187 SGITRYNVLTVAFRTRTSTTPHSTGVT 267
+GIT N++T A T TSTT + VT
Sbjct: 294 NGITNTNIITTATTTTTSTTISTITVT 320
>SB_46128| Best HMM Match : VQ (HMM E-Value=4.6)
Length = 333
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 196 TRYNVLTVAFRTRTSTTPHSTGVT 267
+RYN+ T +FR T+TT ST VT
Sbjct: 270 SRYNIETASFRHATTTT-QSTSVT 292
>SB_56910| Best HMM Match : ATP-synt_E_2 (HMM E-Value=5.4)
Length = 329
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 250 HSTGVTRPRCLEALAVDDAGAGLVVFLLRNPHLLEGGQGSQDGSTDPYGVL 402
HS + PR + ++ A + ++ L PH L GS+D YG++
Sbjct: 231 HSLNIRHPRPYPSREIESATSEQIIGTL--PHRLSFHTGSRDWGQTSYGIM 279
>SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1104
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 270 PRDPGAVWCCARPSSERNRQYVVPSDT 190
P DPG++W PS E ++Y P DT
Sbjct: 262 PNDPGSLWNFVSPSME--KRYGNPRDT 286
>SB_28298| Best HMM Match : IncA (HMM E-Value=0.32)
Length = 225
Score = 26.2 bits (55), Expect = 10.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 175 DVQFSGITRYNVLTVAFRTRTSTTPHSTG 261
DV GI+ Y L A +TST P STG
Sbjct: 5 DVSSGGISIYPPLPSAHPPQTSTAPASTG 33
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -1
Query: 402 KYSVWIGGSILASL 361
+++ WIGGSILASL
Sbjct: 217 RFNPWIGGSILASL 230
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,605,584
Number of Sequences: 59808
Number of extensions: 210276
Number of successful extensions: 493
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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