Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30039X
(421 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 104 3e-23
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 1e-22
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 1e-22
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 102 1e-22
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 2e-22
SB_56| Best HMM Match : Actin (HMM E-Value=0) 101 2e-22
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 93 1e-19
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.003
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 35 0.031
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_54442| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37) 27 6.3
SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_46128| Best HMM Match : VQ (HMM E-Value=4.6) 27 8.3
SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 104 bits (250), Expect = 3e-23
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = -3
Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
ALAPS+ KIKIIAPP+RK+SV IGGSILASLSTFQQMWISK+E DESGP IVHRKCF
Sbjct: 293 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 102 bits (245), Expect = 1e-22
Identities = 48/57 (84%), Positives = 52/57 (91%)
Frame = -3
Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
ALAP + KIKIIAPP+RK+SV IGGSILASLSTFQQMWISK+E DESGP IVHRKCF
Sbjct: 282 ALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 102 bits (245), Expect = 1e-22
Identities = 48/57 (84%), Positives = 52/57 (91%)
Frame = -3
Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
ALAP + KIKIIAPP+RK+SV IGGSILASLSTFQQMWISK+E DESGP IVHRKCF
Sbjct: 319 ALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 102 bits (245), Expect = 1e-22
Identities = 48/57 (84%), Positives = 52/57 (91%)
Frame = -3
Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
ALAP + KIKIIAPP+RK+SV IGGSILASLSTFQQMWISK+E DESGP IVHRKCF
Sbjct: 320 ALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 101 bits (242), Expect = 2e-22
Identities = 47/57 (82%), Positives = 52/57 (91%)
Frame = -3
Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
+LAP + KIKIIAPP+RK+SV IGGSILASLSTFQQMWISK+E DESGP IVHRKCF
Sbjct: 320 SLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 101 bits (242), Expect = 2e-22
Identities = 47/57 (82%), Positives = 52/57 (91%)
Frame = -3
Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
+LAP + KIKIIAPP+RK+SV IGGSILASLSTFQQMWISK+E DESGP IVHRKCF
Sbjct: 319 SLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 92.7 bits (220), Expect = 1e-19
Identities = 43/56 (76%), Positives = 49/56 (87%)
Frame = -3
Query: 416 LAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
LA +S K+K+IAPP+RK+SV IGGSILASLSTFQQMWI+KEE E GP IVHRKCF
Sbjct: 94 LANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 37.9 bits (84), Expect = 0.003
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -3
Query: 398 KIKIIAPPDRKHSVRIGGSILAS-LSTFQQMWISKEESDESG 276
KI+I PP RKH V +GG++LA + W++++E +E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 34.7 bits (76), Expect = 0.031
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -3
Query: 416 LAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
+ P + ++I+ ++++V GGS+LAS F + +K + DE GP I F
Sbjct: 285 IKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340
>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 216 HSTGVTRPRCLEALAVDDAGAGLVGFLLRDPHLLEGGQGSQDGSTDPYGVL 368
H+ V+ + A D+G ++ LRD H+ G +G DG +G++
Sbjct: 665 HNNSVSFRKGSRETAKSDSGVEMIS--LRDNHVGNGDEGKTDGGNAGFGLV 713
>SB_54442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.1 bits (57), Expect = 6.3
Identities = 20/72 (27%), Positives = 29/72 (40%)
Frame = +3
Query: 147 QFSGITRYNVLTVAFRTRTSTTPHSTGVTRPRCLEALAVDDAGAGLVGFLLRDPHLLEGG 326
Q++ +T N++ RTST T+ + D A +LL L E
Sbjct: 25 QYAALTSCNLIGQINNIRTSTQRTRRIETKELLCRTKIIGDKAAA---YLLIKKALKETR 81
Query: 327 QGSQDGSTDPYG 362
G +DG D YG
Sbjct: 82 NGYEDGDVDDYG 93
>SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 250 KHLRWTMPGPDSSDSSFE-IHICWKVDREARMDP 348
K++RW PD + SSF+ + + V+R+ +DP
Sbjct: 176 KYVRWPPLYPDWNQSSFDLVEVLSAVNRDLNIDP 209
>SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)
Length = 352
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 153 SGITRYNVLTVAFRTRTSTTPHSTGVT 233
+GIT N++T A T TSTT + VT
Sbjct: 294 NGITNTNIITTATTTTTSTTISTITVT 320
>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 271 PGPDSSDSSFEIHICWKVDREARMDPPIRTECF 369
PG S + E + VD EAR+ P R+ECF
Sbjct: 121 PGTVSFEICSEEQVTGIVDAEARLLKPGRSECF 153
>SB_46128| Best HMM Match : VQ (HMM E-Value=4.6)
Length = 333
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 162 TRYNVLTVAFRTRTSTTPHSTGVT 233
+RYN+ T +FR T+TT ST VT
Sbjct: 270 SRYNIETASFRHATTTT-QSTSVT 292
>SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1104
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 236 PRDPGAVWCCARPSSERNRQYVVPSDT 156
P DPG++W PS E ++Y P DT
Sbjct: 262 PNDPGSLWNFVSPSME--KRYGNPRDT 286
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,898,199
Number of Sequences: 59808
Number of extensions: 220216
Number of successful extensions: 527
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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