Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0120
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11437| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 2e-18
SB_47794| Best HMM Match : U-box (HMM E-Value=1.2e-28) 33 0.23
SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15) 30 1.6
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_18884| Best HMM Match : GPW_gp25 (HMM E-Value=0.84) 29 2.9
SB_47892| Best HMM Match : WCCH (HMM E-Value=3.3) 28 5.0
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 27 8.7
SB_17683| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_47111| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_11437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 89.4 bits (212), Expect = 2e-18
Identities = 53/88 (60%), Positives = 59/88 (67%), Gaps = 10/88 (11%)
Frame = +3
Query: 354 QELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGHCSTP---------STTPHGG 506
+ELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAG TP S
Sbjct: 56 KELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIVPTPALVAAPVALSVLADES 115
Query: 507 VEXSAGAT-GMSADVVSRLQXSATALHA 587
+E AG GM+ +V+ +LQ AT L A
Sbjct: 116 MEVQAGEEGGMTEEVLQKLQEKATLLTA 143
Score = 61.7 bits (143), Expect = 4e-10
Identities = 27/52 (51%), Positives = 35/52 (67%)
Frame = +1
Query: 55 MSLYCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDL 210
M+ YC+IS+ SP SG VFERR+IEKYI ENG DP+NG+ + + L
Sbjct: 1 MAFYCSISHEVPEHPCISPLSGNVFERRLIEKYIAENGTDPVNGEPMSEDQL 52
>SB_47794| Best HMM Match : U-box (HMM E-Value=1.2e-28)
Length = 121
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 109 PTSGAVFERRIIEKYIIENGVDPINGKELRVEDL 210
PTSG + ++ II ++++ + DP N K L V L
Sbjct: 53 PTSGKIMDKEIISRHLLSDQSDPFNRKHLTVSML 86
>SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 372 LYQHDAACRVIARLTKEVTAAREALATLKPQAG-HCSTPSTTPHGGVEXSAGA 527
L H + +V RLT + A + + PQ+G H + T P G + +GA
Sbjct: 1016 LTNHQSGAQVKVRLTNPQSGAHDNVRLTNPQSGAHDNVRLTNPQSGAQAKSGA 1068
>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
Length = 884
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/78 (33%), Positives = 34/78 (43%)
Frame = +2
Query: 260 INPCHTEKHAR*VGRPDVTCLHTETAVADC*TRIKSCIVPTRRSVSCDSPTHKGGDGGAR 439
I+P HTE A GR DV C T+ C+ P+R S +SP+ K G R
Sbjct: 380 IHPIHTEAVANVTGRADVQCALFYLLSFLSFTK---CVQPSRTS---NSPSKK-SPGNIR 432
Query: 440 GPRHTETAGRALQHPKHH 493
P H G + +P H
Sbjct: 433 AP-HPSLHGSSRTNPSLH 449
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -2
Query: 300 PTHLACFSVWQGLMWPWRFWLYYRW 226
P L +S+W +WPW W W
Sbjct: 1632 PRSLLPWSLWPRSLWPWSLWSRSMW 1656
Score = 28.7 bits (61), Expect = 3.8
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -2
Query: 279 SVWQGLMWPWRFWLYYRW 226
S+W +WPW FW W
Sbjct: 1614 SLWPRSLWPWSFWSRSLW 1631
>SB_18884| Best HMM Match : GPW_gp25 (HMM E-Value=0.84)
Length = 486
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 480 CCNARPAVSVWRGPLAPPSPPL*VGLSHD 394
C V V G LAPP+PPL GL ++
Sbjct: 101 CSGPSAIVRVKGGALAPPTPPLGTGLGYE 129
>SB_47892| Best HMM Match : WCCH (HMM E-Value=3.3)
Length = 136
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 527 CSRTALYASVGCGAWGAAMPGLRFQCGEGLSRR 429
C+RT YA G G G M LR +C S R
Sbjct: 89 CARTYEYALFGAGCRGGVMSYLRSRCDRETSSR 121
>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1931
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -2
Query: 243 WLYYRWCFDLNKVLNSQLLA--VNRIHAIFYYVLLNDSPFK 127
W Y DL L +L R H +F+YVL ND P +
Sbjct: 128 WRGYAEMTDLQNTLKVKLDIPYTGRYHVVFHYVLENDKPVR 168
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 401 DSPTHKGGDGGARGPRHTETAG-RALQHPK 487
DS T K G++GP+H T+G A++ PK
Sbjct: 252 DSATPKHKSTGSQGPKHDPTSGPTAMRFPK 281
>SB_17683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 907
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 279 KSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALAT 452
K +WD+ +F R L+ Q+ + L Q VIAR K++ A R LAT
Sbjct: 762 KMTNSDWDSRREESFIARSFLK--EQQATEQLRQR---LEVIARKQKDIAATRAGLAT 814
>SB_47111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 459 PQAGHCSTPSTTPHGGVEXSA--GATGMSADVVSRLQXSATAL 581
P+A +TPST HG ++ A G T +AD AT+L
Sbjct: 65 PKARQPATPSTRRHGSLQRRAPEGTTASNADQQKHDNRGATSL 107
>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 112 TSGAVFERRIIEKYIIENGVDPINGKELRVEDL 210
T G VF + + +I ENG P+ ++L ++DL
Sbjct: 71 TCGHVFCSQCLVHWIAENGTCPLTCEQLAIDDL 103
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,809,367
Number of Sequences: 59808
Number of extensions: 388782
Number of successful extensions: 1130
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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