Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0117
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)                      35   0.071
SB_47339| Best HMM Match : Rubredoxin (HMM E-Value=0.76)               35   0.071
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.071
SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)                  31   1.2  
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            29   4.7  

>SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)
          Length = 975

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = -1

Query: 610 LQLAMIPILHFSGAMIPGTVRTNQSRLVLSQ-EGHF---YSHHIMLWHT-FCNAHNEGHF 446
           +QL ++   HF+  +  G VR    RL L   EGH+      H +L HT FC   N+G+ 
Sbjct: 412 IQLNVVSRSHFNSLIYTGEVREVVHRLYLYYAEGHYDYVTKVHRVLGHTYFCETCNKGYS 471

Query: 445 SLNSF*NGCCSSRG 404
           S     +G C S G
Sbjct: 472 SRQHPCHGLCRSCG 485


>SB_47339| Best HMM Match : Rubredoxin (HMM E-Value=0.76)
          Length = 730

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = -1

Query: 610 LQLAMIPILHFSGAMIPGTVRTNQSRLVLSQ-EGHF---YSHHIMLWHT-FCNAHNEGHF 446
           +QL ++   HF+  +  G VR    RL L   EGH+      H +L HT FC   N+G+ 
Sbjct: 216 IQLNVVSRSHFNSLVYSGEVRDMVHRLYLYYAEGHYDYVTKVHRVLGHTYFCKTCNKGYS 275

Query: 445 SLNSF*NGCCSSRG 404
           S     +G C S G
Sbjct: 276 SPQHPCDGLCRSCG 289


>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = -1

Query: 610 LQLAMIPILHFSGAMIPGTVRTNQSRLVLSQ-EGHF---YSHHIMLWHT-FCNAHNEGHF 446
           +QL ++   HF+  +  G VR    RL L   EGH+      H +L HT FC   N+G+ 
Sbjct: 454 IQLNVVSRSHFNSLVYSGEVRDMVHRLYLYYAEGHYDYVTKVHRVLGHTYFCKTCNKGYS 513

Query: 445 SLNSF*NGCCSSRG 404
           S     +G C S G
Sbjct: 514 SPQHPCDGLCRSCG 527


>SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 445

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 489 MIWCE*KCPS*DKTSLDWLVLTVPGIIAPEKCKIGIM 599
           M+ C+ KC   D+  +  +    PG+I P +CKIGIM
Sbjct: 1   MLECKVKC---DELGVRLIGPNCPGVITPGECKIGIM 34


>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 454 GHFSLNSF*NGC-CSSRGRYINNRGSCSC 371
           GHF L  + + C C+  G   + RG CSC
Sbjct: 381 GHFFLQGYCSRCQCNGHGSICDERGKCSC 409


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 554 CSWYHCSREV*NWYH 598
           C+WYH ++   NWYH
Sbjct: 499 CNWYHPTKTQANWYH 513


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,126,779
Number of Sequences: 59808
Number of extensions: 477918
Number of successful extensions: 1136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)