Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0100
(586 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43795| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_16703| Best HMM Match : RVT_1 (HMM E-Value=0.41) 29 2.1
SB_9593| Best HMM Match : RVT_1 (HMM E-Value=0.017) 29 2.1
SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1) 28 4.9
SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096) 28 4.9
SB_42200| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_42880| Best HMM Match : Laminin_II (HMM E-Value=2.1) 28 6.4
SB_11570| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_23592| Best HMM Match : Papilloma_E5 (HMM E-Value=2.7) 27 8.5
SB_51094| Best HMM Match : VWA (HMM E-Value=0) 27 8.5
SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1) 27 8.5
>SB_43795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 273 LVDVLIDESSSASTPRARQATMRAYTFIFDAIYLVANSRKN 151
LVDV ID+ A+ P Q ++FD + L A++ K+
Sbjct: 81 LVDVYIDDFYGAAMPDVSQDEFNRMNYVFDELGLAASAAKD 121
>SB_16703| Best HMM Match : RVT_1 (HMM E-Value=0.41)
Length = 523
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 273 LVDVLIDESSSASTPRARQATMRAYTFIFDAIYLVANSRKN 151
LVDV ID+ A+ P Q +FD + LVA++ K+
Sbjct: 332 LVDVYIDDFYGAAMPDVSQDEFNRMNSVFDELGLVASAAKD 372
>SB_9593| Best HMM Match : RVT_1 (HMM E-Value=0.017)
Length = 574
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 273 LVDVLIDESSSASTPRARQATMRAYTFIFDAIYLVANSRKN 151
LVDV ID+ A+ P Q +FD + LVA++ K+
Sbjct: 383 LVDVYIDDFYGAAMPDVSQDEFNRMNSVFDELGLVASAAKD 423
>SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
Length = 269
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Frame = +1
Query: 193 EGVCSHRCLSGSGCAGRGRLIYQNVDQG---CRRT 288
+ C HRC+ G C GR + + +G C RT
Sbjct: 174 QSCCGHRCVFGKSCYGRSCDLTSDCSEGESCCHRT 208
>SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)
Length = 191
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Frame = +1
Query: 193 EGVCSHRCLSGSGCAGRGRLIYQNVDQG---CRRT 288
+ C HRC+ G C GR + + +G C RT
Sbjct: 96 QSCCGHRCVFGKSCYGRSCDLTSDCSEGESCCHRT 130
>SB_42200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 273 LVDVLIDESSSASTPRARQATMRAYTFIFDAIYLVANSRKN 151
LVDV ID+ A+ P Q +FD + L A++ K+
Sbjct: 4 LVDVYIDDFYGAAMPDVSQDEFNRMNSVFDELGLAASAAKD 44
>SB_42880| Best HMM Match : Laminin_II (HMM E-Value=2.1)
Length = 647
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 273 LVDVLIDESSSASTPRARQATMRAYTFIFDAIYLVANSRKN 151
LVDV ID+ A+ P Q +FD + L A++ K+
Sbjct: 325 LVDVYIDDFYGAAMPDVSQDEFNRMNSVFDELGLAASAAKD 365
>SB_11570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 273 LVDVLIDESSSASTPRARQATMRAYTFIFDAIYLVANSRKN 151
LVDV ID+ A+ P Q +FD + L A++ K+
Sbjct: 390 LVDVYIDDFYGAAMPDVSQDEFNRMNSVFDELGLAASAAKD 430
>SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 115 RQYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLS 222
R + RH ++ +F R+ H NR++Y+G ++ C++
Sbjct: 367 RSHVRHEAS---LFGRMNHYENRVEYKGFTANICIA 399
>SB_23592| Best HMM Match : Papilloma_E5 (HMM E-Value=2.7)
Length = 165
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 312 RAAVRQT*SPSASLVDVLIDESSSASTPRARQATMRAYTF 193
R ++R T SPS+SL S + PR RQ ++AY F
Sbjct: 16 RTSMRSTLSPSSSLKG-----KSPSRLPRVRQGELKAYRF 50
>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
Length = 3544
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -2
Query: 315 IRAAVRQT*SPSASLVDVLIDESSSASTPRARQATMRAYTFIFD 184
+ A+RQ+ S +++L + L + +TP R+++ +A I D
Sbjct: 2319 VNKAIRQSLSGNSNLEEALTNAKKILNTPNTRKSSRKAVVIITD 2362
>SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)
Length = 245
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -3
Query: 167 RILEKITSAFDVCRKYCLYTHWRRRRLPTMTRLDENVRTKTTDCN 33
R L+ + SA VC +YCLY W R R ++ + + T TD N
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRARNKSLQDI-TTMFTPHTDWN 141
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,145,543
Number of Sequences: 59808
Number of extensions: 338596
Number of successful extensions: 765
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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