Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0079
(271 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 56 4e-09
SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.063
SB_41447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.4
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05) 27 2.4
SB_34022| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 26 4.1
SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1) 26 5.5
SB_36025| Best HMM Match : LHC (HMM E-Value=2.9) 26 5.5
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17) 25 7.2
SB_5331| Best HMM Match : Fork_head (HMM E-Value=0) 25 7.2
SB_49485| Best HMM Match : rve (HMM E-Value=0.00023) 25 9.5
SB_21717| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.64) 25 9.5
SB_45410| Best HMM Match : DUF29 (HMM E-Value=2.3) 25 9.5
SB_19985| Best HMM Match : WH2 (HMM E-Value=1.9) 25 9.5
SB_10797| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_5598| Best HMM Match : C1_1 (HMM E-Value=0.87) 25 9.5
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 56.0 bits (129), Expect = 4e-09
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = +1
Query: 169 VXRVAGGNDKQGFPMKQGVLTNSRVASSESKGHS 270
V R+ GGNDKQGFPMKQG++TN RV SKGHS
Sbjct: 16 VFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHS 49
>SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 32.3 bits (70), Expect = 0.063
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -2
Query: 243 NTAVCQDPLFHRESLLVVAASDTXYHXPSIHR---LTDQPLLRRPCAFR 106
+T + Q P ++R + + + Y P +R +TD PLL+ PC +R
Sbjct: 205 DTLLLQTPCYYRHPAIPLLQTPCYYRHPRYYRHPTITDIPLLQTPCYYR 253
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -2
Query: 243 NTAVCQDPLFHRESLL---VVAASDTXYHXPSIHRLTDQPLLRRPCAFR 106
+T + Q P ++R + ++ + Y P I TD PLL+ PC +R
Sbjct: 259 DTLLLQTPCYYRHPAITDTLLLQTSRYYRHPPI---TDIPLLQTPCYYR 304
>SB_41447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 666
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 269 EWPFDSEDATRLFVRT 222
EWPFDSED F RT
Sbjct: 333 EWPFDSEDLESAFDRT 348
>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
Length = 1081
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 153 HRLTDQPLLRRPCAFRKRXEACARPPLRTTSGIPLP 46
H ++ + L RR A R+ ACAR P ++ P+P
Sbjct: 698 HFMSCKTLGRRSLASRRDARACARAPKMPSAHTPVP 733
>SB_34022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 134 LYFGAHALFVKDXKL-VLVHHFEQLLASRCRVRN 36
LY+ H +F + VL H+ + L R R+RN
Sbjct: 72 LYYATHPVFFSSRAVYVLTHNLSKNLGYRARIRN 105
>SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 716
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 132 LLRRPCAFRKRXEACARPPLRTTSGIPLP 46
L RR A R+ +ACAR P ++ P+P
Sbjct: 596 LSRRSLASRRDAKACARAPKMPSAHTPVP 624
>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
Length = 796
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 267 VAL*LRRRNTAVCQDPLFHRESLLVVAASD 178
V L + + A+ DPL H +SL V+ SD
Sbjct: 252 VTLGEQEADAAIGHDPLLHGKSLFVITTSD 281
>SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1)
Length = 740
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 132 LLRRPCAFRKRXEACARPPLRTTSGIPLP 46
L RR A R+ ACAR P ++ P+P
Sbjct: 491 LSRRSLASRRDARACARAPKMPSAHTPVP 519
>SB_36025| Best HMM Match : LHC (HMM E-Value=2.9)
Length = 671
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 132 LLRRPCAFRKRXEACARPPLRTTSGIPLP 46
L RR A R+ ACAR P ++ P+P
Sbjct: 410 LSRRSLASRRDARACARAPKMPSAHTPVP 438
>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
Length = 1860
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 123 AEVEADQLGDEWKXYGXSCRWRQRQARI 206
AE E +++ W YG S R R+AR+
Sbjct: 891 AEHEGERVYGAWGKYGGSITRRMREARV 918
>SB_5331| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 503
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Frame = -2
Query: 114 AFRKRXEA---CARPPLRTTSGIPLPGTK 37
AFRKR + C RPP T + LP K
Sbjct: 204 AFRKRRQRGVPCFRPPFGTVAACSLPDVK 232
>SB_49485| Best HMM Match : rve (HMM E-Value=0.00023)
Length = 631
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 20 SHEVKRFVPGNGMPEVVRSGGRAQASXLLRKA 115
SHE +RF G+ V S G AQ+ + A
Sbjct: 593 SHEFRRFTNSYGIEHVTSSPGYAQSKGKVENA 624
>SB_21717| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.64)
Length = 499
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 138 QPLLRRPCAFRKRXEACARPPLRTTSGI 55
+P L R F CARPP+ T G+
Sbjct: 399 RPKLGRVAIFHGHIPHCARPPVSTFFGV 426
>SB_45410| Best HMM Match : DUF29 (HMM E-Value=2.3)
Length = 175
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 156 IHRLTDQPLLRRPCAFRKRXEACARPPLRTTSGIPLPGTKRL 31
++R+ P LR+ FR+ EA P + T+ + G KRL
Sbjct: 3 LNRVAAHPELRKDPDFRQFLEADELPRAKDTAALSGGGLKRL 44
>SB_19985| Best HMM Match : WH2 (HMM E-Value=1.9)
Length = 127
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 53 GMPEVVRSGGRAQASXLLRKA 115
G+PE V S GRA +RKA
Sbjct: 10 GVPEAVASDGRASLMDAIRKA 30
>SB_10797| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 754
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 126 RRPCAFRKRXEACARPPLRTTSGIPLP 46
RR A R+ ACAR P ++ P+P
Sbjct: 561 RRSLASRRDARACARAPKMPSAHTPVP 587
>SB_5598| Best HMM Match : C1_1 (HMM E-Value=0.87)
Length = 296
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 41 VPGNGMPEVVRSGGRAQASXLLRK 112
+PG+G P VV +AQAS +R+
Sbjct: 202 LPGSGKPTVVMKIPQAQASDFIRE 225
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,150,200
Number of Sequences: 59808
Number of extensions: 133957
Number of successful extensions: 511
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 16,821,457
effective HSP length: 66
effective length of database: 12,874,129
effective search space used: 296104967
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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