Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0072
(621 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30959| Best HMM Match : SRP54 (HMM E-Value=5.2e-25) 90 2e-18
SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9) 33 0.25
SB_20596| Best HMM Match : DUF1237 (HMM E-Value=6.4) 24 7.9
SB_19785| Best HMM Match : SRR1 (HMM E-Value=8.8e-19) 27 9.3
SB_12457| Best HMM Match : zf-C2H2 (HMM E-Value=0.29) 27 9.3
>SB_30959| Best HMM Match : SRP54 (HMM E-Value=5.2e-25)
Length = 440
Score = 89.8 bits (213), Expect = 2e-18
Identities = 40/59 (67%), Positives = 49/59 (83%)
Frame = +1
Query: 76 MLDLFSIFSKGGIVLWCFQSTSEIFSPSVNALIRSVILQERSGNNTFNHNALTLQYKLD 252
MLDLF+IFSKGGIVLWCFQ + + F+ VN LI+ VILQER G+N F H++LTL+YKLD
Sbjct: 63 MLDLFTIFSKGGIVLWCFQESYQSFTLPVNELIKGVILQERGGSNAFTHDSLTLKYKLD 121
>SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWSMRWYATTKTSSNSY 251
WSS S+++ W++ N STY+NWS +T + ++Y
Sbjct: 18 WSSHNNWSIHNNWSTHNNWSTYNNWSTHNNWSTYNNWSTY 57
Score = 32.7 bits (71), Expect = 0.25
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS++ S ++ W++ N STY+NWS
Sbjct: 36 WSTYNNWSTHNNWSTYNNWSTYNNWS 61
Score = 32.3 bits (70), Expect = 0.33
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWSMRWYATTKTSSNSY 251
WS++ S ++ W++ N ST++NW+ R +T + ++Y
Sbjct: 78 WSTYNNWSTHNNWSTYNNWSTHNNWNTRNNWSTHNNWSTY 117
Score = 30.7 bits (66), Expect = 1.00
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS++ S + W++ N STY+NWS
Sbjct: 48 WSTYNNWSTYNNWSTHNNWSTYNNWS 73
Score = 30.7 bits (66), Expect = 1.00
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS++ S ++ W++ N ST++NWS
Sbjct: 54 WSTYNNWSTHNNWSTYNNWSTHNNWS 79
Score = 30.7 bits (66), Expect = 1.00
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS++ S ++ W++ N ST++NWS
Sbjct: 66 WSTYNNWSTHNNWSTYNNWSTHNNWS 91
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS+ S + W++ N STY+NWS
Sbjct: 60 WSTHNNWSTYNNWSTHNNWSTYNNWS 85
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS+ S + W++ N STY+NWS
Sbjct: 72 WSTHNNWSTYNNWSTHNNWSTYNNWS 97
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS+ + + W++ N STY+NWS
Sbjct: 96 WSTHNNWNTRNNWSTHNNWSTYNNWS 121
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS++ S ++ W+ N ST++NWS
Sbjct: 12 WSTYENWSSHNNWSIHNNWSTHNNWS 37
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS+ S + W++ N ST++NWS
Sbjct: 42 WSTHNNWSTYNNWSTYNNWSTHNNWS 67
>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
Length = 483
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWSM--RWYATTKTSSNSYLVCIVVLRHYD*MCYCQ 200
WS++ S + W++ N STY+NWS W L C L H + Y Q
Sbjct: 70 WSTYNNWSTYNNWSTYHNWSTYNNWSTHNNWSTYNNWRYLQQLKCPQQLEHPQQLGYLQ 128
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS+ S + W++ N STYDNWS
Sbjct: 382 WSTHNNWSTYNNWSTYNNWSTYDNWS 407
Score = 31.5 bits (68), Expect = 0.57
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS++ S + W++ N STY+NWS
Sbjct: 58 WSTYNNWSTYNNWSTYNNWSTYNNWS 83
Score = 31.5 bits (68), Expect = 0.57
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWSMRWYATTKTSSNSY 251
WS++ S ++ W++ N ST++NWS+ +T + ++Y
Sbjct: 334 WSTYNNWSTHNNWSTYNNWSTHNNWSILNNWSTYDNCSTY 373
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWSMRWYATTKTSSNSY 251
WS+ S+ + W++ N STY+NWS +T + ++Y
Sbjct: 352 WSTHNNWSILNNWSTYDNCSTYNNWSTHNNWSTHNNWSTY 391
Score = 31.1 bits (67), Expect = 0.75
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS+ S ++ W++ N STY+NWS
Sbjct: 376 WSTHNNWSTHNNWSTYNNWSTYNNWS 401
Score = 30.7 bits (66), Expect = 1.00
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS++ S + W++ N STY NWS
Sbjct: 64 WSTYNNWSTYNNWSTYNNWSTYHNWS 89
Score = 30.7 bits (66), Expect = 1.00
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS++ S ++ W++ N ST++NWS
Sbjct: 310 WSTYNNWSTHNNWSTYNNWSTHNNWS 335
Score = 30.7 bits (66), Expect = 1.00
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS++ S ++ W++ N ST++NWS
Sbjct: 322 WSTYNNWSTHNNWSTYNNWSTHNNWS 347
Score = 30.7 bits (66), Expect = 1.00
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS--MRWYATTKTSSNS 254
WS++ S W++ N ST+DNWS W A S+++
Sbjct: 394 WSTYNNWSTYDNWSTHNNWSTHDNWSNHNNWSAHNNWSAHN 434
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS++ S N+ W++ N STY+NWS
Sbjct: 47 WSTYNNWSHNN-WSTYNNWSTYNNWS 71
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS+ S + W++ N STY+NWS
Sbjct: 304 WSTHNNWSTYNNWSTHNNWSTYNNWS 329
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS+ S + W++ N STY+NWS
Sbjct: 316 WSTHNNWSTYNNWSTHNNWSTYNNWS 341
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS+ S + W++ N STY+NWS
Sbjct: 328 WSTHNNWSTYNNWSTHNNWSTYNNWS 353
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS++ S + W++ N ST++NWS
Sbjct: 388 WSTYNNWSTYNNWSTYDNWSTHNNWS 413
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWS 293
WS+ S ++ W++ N +TY NWS
Sbjct: 418 WSNHNNWSAHNNWSAHNNWNTYHNWS 443
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 367 SSFLYLSLNSKWTSLRNLSTYDNWS 293
S++ S ++ W++ N STY+NWS
Sbjct: 371 STYNNWSTHNNWSTHNNWSTYNNWS 395
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 370 WSSFLYLSLNSKWTSLRNLSTYDNWSMRWYATTKTSSNSY 251
WS++ S ++ W++ N S ++NWS + + N+Y
Sbjct: 400 WSTYDNWSTHNNWSTHDNWSNHNNWSAHNNWSAHNNWNTY 439
>SB_20596| Best HMM Match : DUF1237 (HMM E-Value=6.4)
Length = 526
Score = 24.2 bits (50), Expect(2) = 7.9
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Frame = -3
Query: 343 NSKWTSLRN---LSTYDNWSMRWYAT 275
N +W L N +S D W WYAT
Sbjct: 293 NPEWRQLFNKDVVSMPDKWEYPWYAT 318
Score = 21.8 bits (44), Expect(2) = 7.9
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -3
Query: 457 ACDFAHISHSFSTLSKVVLKLKSTIQGPVWSSFLYLSLNSKW 332
A +F H++ S S+ L + + G +WS Y + W
Sbjct: 231 ADEFYHVAIPASLTSEQKLVARQSYAGLLWSKQFYHYIIHDW 272
>SB_19785| Best HMM Match : SRR1 (HMM E-Value=8.8e-19)
Length = 735
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Frame = -1
Query: 591 FVRFLLSTILTVXF------PFSS-PLRSIIDATVFWIFGN 490
F RF++S IL V F P+ + P+R +ID F I+G+
Sbjct: 12 FRRFIISKILPVSFDIVTEHPYGNKPIRKLIDGCAFRIYGH 52
>SB_12457| Best HMM Match : zf-C2H2 (HMM E-Value=0.29)
Length = 327
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 325 LRNLSTYDNWSMRWYATTKTSSNSYLVCIV 236
L STYD +W TT+ + SYL +V
Sbjct: 158 LERESTYDTIKKKWAETTREMTGSYLYRVV 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,930,984
Number of Sequences: 59808
Number of extensions: 355260
Number of successful extensions: 815
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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