Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0044
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)                 67   2e-11
SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22)                 66   2e-11
SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24)                 56   4e-08
SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)                 52   5e-07
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   33   0.20 
SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)               30   1.9  
SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04)                    29   3.3  
SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_25424| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)                      28   7.7  

>SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)
          Length = 221

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 34/78 (43%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = +3

Query: 48  MPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKP--KTPFGQMPVLEIDG 221
           MPN K  YF  +   E  RL  A GG  +ED R++ E W + K   KT  G +PVLE+DG
Sbjct: 1   MPNYKLIYFNTRGRAEPTRLCFAAGGIPYEDVRLTGEEWTKMKAENKTIMGYLPVLEVDG 60

Query: 222 KQYAQSTAICRTSVASTG 275
            QY +S AI R +    G
Sbjct: 61  IQYCESMAIFRLAAKLAG 78


>SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22)
          Length = 79

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
 Frame = +3

Query: 48  MPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPK--TPFGQMPVLEIDG 221
           MP+ K YYF  +   E  RL+ A  G EFEDNR++   WP+ K +   PFGQ+P+L ID 
Sbjct: 1   MPSYKLYYFNARGRAEPARLVFAAAGIEFEDNRMAMGEWPKVKKELHAPFGQVPLLVIDD 60

Query: 222 K-QYAQSTAICRTSVASTG 275
           K + AQS AI  T +A  G
Sbjct: 61  KIKLAQSLAI-MTFIAREG 78


>SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24)
          Length = 102

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
 Frame = +3

Query: 48  MPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISS-ENWPEFKPK--TPFGQMPVLEID 218
           MP+ K +YF  +   E  RL  A  G E+ED R    E W   KP+   PFGQ+P+L ID
Sbjct: 23  MPSYKLHYFNARGRAEPARLAFAAAGIEYEDKRFEGREEWLRVKPELDPPFGQVPLLVID 82

Query: 219 GK-QYAQSTAI 248
            K + AQS AI
Sbjct: 83  DKIKLAQSMAI 93


>SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)
          Length = 195

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
 Frame = +3

Query: 51  PNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKP--KTPFGQMPVLEI-DG 221
           P  +  YF  +A  E  R+LL      F D R++  +W   K   + PFG++P+LEI DG
Sbjct: 3   PTYRVVYFDARARAECIRVLLHLADVPFTDERVAPPDWAAMKTSGRCPFGELPLLEISDG 62

Query: 222 KQYAQSTAICR 254
           ++ AQS AI R
Sbjct: 63  RKLAQSHAIFR 73


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = +3

Query: 93  ESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRTSVAST 272
           E QRL+L    +E + NR ++  W E  P  P     +LEI  +Q  Q  A  +    S 
Sbjct: 768 ERQRLILEQQERE-QQNRAAAAGWGEHAPVGPPPVKSLLEIQEEQARQQKAKAQNQQLSR 826

Query: 273 GSPGP 287
             P P
Sbjct: 827 SQPAP 831


>SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 69  YFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFK 176
           YF V+A GE  R+LL      F + R   E+WP  K
Sbjct: 95  YFDVRARGECIRVLLHLADVPFTEERHGLEDWPAVK 130


>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
          Length = 430

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +1

Query: 28  YCTITRQCRTLSSTISPSRPSARARGCCWLTAARSSKTIAFHLKTGQNSNLRLRSVRCRC 207
           YC  T   + LS+ +     S R   CC  T   SSK ++ +++ G  ++ ++ S   RC
Sbjct: 157 YCQHTSS-KVLSAYVQQGVVSIRPARCCQHT---SSKVLSAYVQQGVVTSSKVLSRPARC 212

Query: 208 WKSTASSTLRA 240
            + T+S  L A
Sbjct: 213 CQHTSSKVLSA 223


>SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04)
          Length = 618

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 451 DTDEEQRSYRAWQVDLGRLLYAGMYDYLKAMLQKPDLEQKYPAFRKPIEAVLAIPKVKA 627
           D D      +A  VD GRL    ++ YL  ++  PD + ++P   K  + VL IP   A
Sbjct: 496 DGDLPSAVRQASLVDGGRLRPDAVWGYLNGLVS-PDGQPRFPRLSKVAQLVLTIPHSNA 553


>SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 490 VDLGRLLYAGMYDYLKAMLQKPDLEQKYPAFRKPIEAVLAIPKVKA 627
           VD GRL    ++ YL  ++  PD + ++P   K  + VL IP   A
Sbjct: 533 VDGGRLRPDAVWGYLNGLVS-PDGQPRFPRLSKVTQLVLTIPHSNA 577


>SB_25424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 57  VKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPK 182
           V  +YF  +   E  RL++   G  + +   + E+WP  K K
Sbjct: 54  VTLHYFGSRGKAEGIRLMMEDNGVLYAETNYTKEDWPTVKQK 95


>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
          Length = 1776

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 27/113 (23%), Positives = 39/113 (34%), Gaps = 4/113 (3%)
 Frame = +1

Query: 7   CYRTIINYCTITRQCRTLSSTISPSRPSARARGCCWLTAARSSKTIAFHLKTGQNSNLRL 186
           C R +     +  Q  ++ S  SPSRPS        LT + +  TI        +S  + 
Sbjct: 70  CVRNVSQVLRVYPQENSVHSKPSPSRPSLNIAPSSTLTPSTAGHTIDIRSTDHVHSRAQE 129

Query: 187 RSV-RCRCWKSTASSTLRA---PPSAGPRSQVXXXXXXXXXXXXXXPERGVPE 333
             +      K+TA+ST      PP   P +                PE   PE
Sbjct: 130 EQIPTLSTLKTTATSTSTTKYIPPPPSPPTTTTTTTPETTAPRTTTPETTTPE 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,956,666
Number of Sequences: 59808
Number of extensions: 329675
Number of successful extensions: 908
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)