Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0016
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47587| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.004) 152 2e-37
SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15) 62 6e-10
SB_32366| Best HMM Match : Kinesin (HMM E-Value=0) 60 2e-09
SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13) 59 4e-09
SB_24310| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) 47 1e-05
SB_1969| Best HMM Match : Glyco_transf_8 (HMM E-Value=6.3e-09) 46 2e-05
SB_6251| Best HMM Match : NMU (HMM E-Value=5.7) 31 0.70
SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16) 31 1.2
SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45) 29 2.8
SB_18092| Best HMM Match : Ly-6_related (HMM E-Value=1.5) 28 6.5
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_32261| Best HMM Match : rve (HMM E-Value=3.2e-14) 28 8.6
>SB_47587| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.004)
Length = 114
Score = 152 bits (369), Expect = 2e-37
Identities = 65/86 (75%), Positives = 76/86 (88%)
Frame = +1
Query: 256 DVLDSRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELS 435
D LDS+D A+LALL RPELGITFTKI CWNLT Y+KCVF+DAD+LV+QNCDELF+R ELS
Sbjct: 15 DPLDSQDDANLALLSRPELGITFTKIRCWNLTHYQKCVFMDADMLVLQNCDELFDRCELS 74
Query: 436 AAPDVGWPDCFNSGVFVFKPSNETSR 513
A PD+GWPDCFNSG+FVF+PS T +
Sbjct: 75 AVPDIGWPDCFNSGMFVFEPSRATHK 100
>SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15)
Length = 847
Score = 61.7 bits (143), Expect = 6e-10
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Frame = +1
Query: 319 TFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPD---VGWPD-CFNSGVFV 486
T T+ H WN TQY K ++ D D +++ N DELF E AA + G D CFN+G+ V
Sbjct: 240 THTRFHAWNYTQYSKIIYADPDYMLLSNMDELFHLSEDFAAAECARAGMVDPCFNAGLLV 299
Query: 487 FKPS 498
F+PS
Sbjct: 300 FRPS 303
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 89 WVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEA 211
W++ ND Y + A+VL HS++ V + L++ VS+A
Sbjct: 161 WLSALVNDEYVIPAVVLGHSIKTLSCVKKMLVLVSDEVSKA 201
>SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1492
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Frame = +1
Query: 319 TFTKIHCWNLTQYEKCVFLDADILVIQNCDELFE-REELSAA--PDVGWPD-CFNSGVFV 486
T T+ H WN T Y K ++ D DI+++ N DELF +E +AA G D CFN+G+ V
Sbjct: 1169 THTRFHAWNYTHYRKIIYADPDIMLMSNMDELFAIPDEFAAAYCGRSGMVDPCFNAGLLV 1228
Query: 487 FKPSN 501
FKPS+
Sbjct: 1229 FKPSH 1233
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 89 WVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 253
W+++ ND Y + A+VL H++R V ++ VS++ + L + V+
Sbjct: 1069 WLSVLVNDEYVIPAVVLGHTIRVFSCVKTMTVFVSNEVSKSGQKALEKTMTVFVS 1123
>SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13)
Length = 310
Score = 58.8 bits (136), Expect = 4e-09
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Frame = +1
Query: 319 TFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWP----DCFNSGVFV 486
T T+ H W TQ+ K V+LD D + + N DELF+ + AA P CFN+G+ V
Sbjct: 171 THTRFHAWGFTQFSKIVYLDPDYMPMTNIDELFDVDSEFAASVCSRPGVLDPCFNAGMLV 230
Query: 487 FKPSNETSR 513
F+P N + +
Sbjct: 231 FRPENRSKK 239
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +2
Query: 86 AWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEV 247
AW+T ND + L ALVL +SL++ +A ++ V+ R+ LR V EV
Sbjct: 91 AWLTALVNDDFALPALVLGYSLQKFSCQKNMIAFVSEDVTSQTREALRKVGWEV 144
>SB_24310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +2
Query: 110 DSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTETFWTQETRL 283
D Y GAL +AHSLR + + V ++TP V+ R LR V+ +V+ + Q+ RL
Sbjct: 4 DGYAAGALAVAHSLRMVQTKHDLVCMVTPDVTNPTRRHLRVVYDDVIEVPYIRQKCRL 61
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +1
Query: 319 TFTKIHCWNLTQYEKCVFLDADILVIQNCDELFE 420
+FTK +C NL QYE+ +F+DAD++V N D+LFE
Sbjct: 78 SFTKWNCLNLVQYERVMFIDADMVVKVNSDDLFE 111
>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
Length = 582
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 77 SNRAWVTLAT-NDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 253
S AWVTL D Y GAL +A SLR + Y V ++TP V+ R L ++ V+
Sbjct: 257 SRCAWVTLVMLGDGYAAGALAVAQSLRMVQTKYDLVCMVTPDVTHPTRRHLCVMYDHVIE 316
Query: 254 ETFWTQETRLTW 289
+ R W
Sbjct: 317 VPYIQHRCRKLW 328
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +1
Query: 319 TFTKIHCWNLTQYEKCVFLDADILVIQNCDELFE 420
+FTK +C NL QYE+ +F+DAD++V N D+LFE
Sbjct: 343 SFTKWNCLNLVQYERVMFIDADMVVKVNSDDLFE 376
>SB_1969| Best HMM Match : Glyco_transf_8 (HMM E-Value=6.3e-09)
Length = 347
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 77 SNRAWVTLAT-NDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVV 250
S AWVTL D Y GAL +AHSLRR + + V ++TP V+ + L V+ V+
Sbjct: 45 SRYAWVTLVMCGDGYAAGALAVAHSLRRVETRHDLVYMVTPDVTHSTYRHLCVVYDHVI 103
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = +1
Query: 319 TFTKIHCWNLTQYEKCVFLDADILVIQNCDELFE 420
+FTK +C L YE+ +F+DAD++V +N D+LFE
Sbjct: 131 SFTKWNCLKL-DYERVLFIDADMIVKENSDDLFE 163
>SB_6251| Best HMM Match : NMU (HMM E-Value=5.7)
Length = 186
Score = 31.5 bits (68), Expect = 0.70
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +1
Query: 400 NCDELFEREELSAAPDVGWPD----CFNSGVFVFKPSNETSR 513
N DELF+ + AA P CFN+G+ VF+P N + +
Sbjct: 5 NIDELFDVDSEFAASVCSRPGVLDPCFNAGMLVFRPENRSKK 46
>SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16)
Length = 491
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -1
Query: 241 GENCAK--TIPHSFTDGRCDECYGRVHRTGAAERMGQHQSSQAVGVVCGQSYPCSI 80
G C K +I G+C++ Y + + G + +G Q GV G S CS+
Sbjct: 134 GTRCFKDSSIKDVCIQGKCEKSYLNIQQVGCDDVLGSGQRVDRCGVCNGDSSTCSV 189
>SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45)
Length = 638
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -1
Query: 205 TDGRCDECYGRVHRTGAAERMGQHQSSQAVGVVCGQS 95
T G C +CYGR TG + G +AVGV+ QS
Sbjct: 491 TQGICAKCYGRNLATGKMTQKG-----EAVGVIAAQS 522
>SB_18092| Best HMM Match : Ly-6_related (HMM E-Value=1.5)
Length = 139
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 702 FSNSVP*MFQSW*NMSKKAAVVTLYRKGRCLLMSPCAQSEKK 577
F+NSVP Q +++ ++++ L+R+GR + PC +
Sbjct: 60 FANSVPMFDQGRVDLTYESSMTRLFREGRTETVRPCTNESTR 101
>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2509
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -3
Query: 509 EVSFEGLKTKTPELKQSGHPTSGAADXXXXXXXXSQFWITNISASRNTH 363
E ++G+ K + QSGHP G + +WI ++ + + H
Sbjct: 703 EPHYQGIVAKGNGMVQSGHPAPGPIEAYLSAMSSQWWWINQLTLAFDEH 751
>SB_32261| Best HMM Match : rve (HMM E-Value=3.2e-14)
Length = 628
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/52 (40%), Positives = 25/52 (48%)
Frame = -3
Query: 623 REDAC*CRRAPSQRRKSSVALDHHHQNCLAXRELYQFLEVSFEGLKTKTPEL 468
R DA C RAP ++ V L H HQ+ A L VS GL T+ EL
Sbjct: 78 RRDARACARAPKMPHEALVRLRHTHQSRKAT------LLVSLIGLYTRRREL 123
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,852,120
Number of Sequences: 59808
Number of extensions: 407142
Number of successful extensions: 1173
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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