Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0018
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   130   1e-30
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   2e-04
SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.044
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     33   0.24 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                33   0.31 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               31   0.72 
SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)           29   3.8  
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)                  29   5.1  
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)              29   5.1  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  130 bits (314), Expect = 1e-30
 Identities = 61/69 (88%), Positives = 65/69 (94%)
 Frame = +3

Query: 54  VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 233
           VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1   VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60

Query: 234 DEQDRCIPL 260
           DEQDRCI +
Sbjct: 61  DEQDRCITI 69



 Score =  110 bits (264), Expect = 1e-24
 Identities = 57/84 (67%), Positives = 64/84 (76%)
 Frame = +2

Query: 257 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 436
           IKSTAIS+++EL E D  +IT P  ++  E+GFLINLIDSPGHVDFSSEVTAALRVTDGA
Sbjct: 69  IKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGA 126

Query: 437 LXXXXXXXXXXXQTETVLRQAIAE 508
           L           QTETVLRQAIAE
Sbjct: 127 LVVVDCVSGVCVQTETVLRQAIAE 150



 Score =  104 bits (249), Expect = 8e-23
 Identities = 50/92 (54%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
 Frame = +1

Query: 454 CVWCVCTN*NSTA-SGYCRGIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIA 630
           CV  VC    +         IKP+LFMNKMDR            YQTF RIVE++NVIIA
Sbjct: 132 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQTFARIVESINVIIA 191

Query: 631 TYNDDGGPMGEVLVDPSKGSVGFGSGLHGWAF 726
           TY+D+ GPMG + V P KG+V FGSGLHGWAF
Sbjct: 192 TYSDEDGPMGNIQVGPEKGTVAFGSGLHGWAF 223


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/50 (42%), Positives = 32/50 (64%)
 Frame = +3

Query: 105  IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 254
            +RN S++AHVDHGKSTL D L+   G I+ + +   +  D  + E++R I
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGI 1989


>SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 676 PSKGSVGFGSGLHGWAF 726
           P KG+V FGSGLHGWAF
Sbjct: 34  PEKGTVAFGSGLHGWAF 50


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 19/85 (22%), Positives = 40/85 (47%)
 Frame = +3

Query: 51  MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 230
           + N+ ++ +  +MD    IRN+++  H+  GK+   D L  +      A+ G+    +T 
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171

Query: 231 KDEQDRCIPLNLRPSLCSSSLKRKI 305
           +      +  NL  ++C + + R I
Sbjct: 172 R-LLKHAVQENLAITICINKIDRLI 195



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/66 (19%), Positives = 32/66 (48%)
 Frame = +1

Query: 529 MNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVLVDPSKGSVGFGSG 708
           +NK+DR            Y   + +++ VN +++ +++      ++++ P  G+V F S 
Sbjct: 188 INKIDRLILELKLPPTDAYYKLKHVIDEVNGLLSVFSEGA---DDLVISPLLGNVCFASS 244

Query: 709 LHGWAF 726
            + + F
Sbjct: 245 SYHFCF 250


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +2

Query: 257 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 436
           IK  A S F E+E +  + +        + +   IN++D+PGH DF+ +    L   D  
Sbjct: 48  IKKGATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSV 106

Query: 437 LXXXXXXXXXXXQTETVL 490
           +           QTE ++
Sbjct: 107 IVVIDVAKGVEEQTEKLV 124



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 90  DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 203
           D+ +  R   +I+H D GK+TLT+ L+   G I  A A
Sbjct: 5   DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGA 42


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 114 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 215
           ++++ HVDHGK+TL D+L   + + AG   G T+
Sbjct: 31  VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = +2

Query: 338 KSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 502
           K   G  I  ID+PGH  F+S       VTD  +           QT   +R A+
Sbjct: 71  KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAM 125


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 87  MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 114 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 215
           ++V+ HVDHGK++L D  +  A +I G   G T+
Sbjct: 94  VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126


>SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)
          Length = 457

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 420 VSLMEPLWLLTVCLVCVYKLKQYCVRLLPRHQAYSVHEQNGPCS 551
           +S+  P+  L VCL+ VY + ++ ++    HQ+   H+  GP S
Sbjct: 114 ISICAPVAALIVCLIIVYMIFRHLMKHHAHHQSVPRHDL-GPVS 156


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 225 TRKDEQDRCIPLNLRPSLCSSSLKRKI*YSSQTLTSVKRVRK 350
           TRK +    IP ++R S   S +++ I  S  TL + K +RK
Sbjct: 11  TRKSKTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = -2

Query: 471 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKPFSLFSRWSGFVMNTKS 301
           TH+P +  TTT AP+         E    C G+ ++L     K  +L  R+ G       
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCGTNAPMML 671

Query: 300 FSSSSK 283
             SS K
Sbjct: 672 MGSSDK 677


>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
          Length = 300

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 432 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 310
           P   R A        TCPGE ++L+ +     +RWS  V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281


>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
          Length = 563

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 499 YCRGIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIAT 633
           +   I+P L +NK+DR            +   Q+I+E VN I  T
Sbjct: 126 WLENIRPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVNAITGT 170



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 395 SSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAE 508
           + +V+ A+R+ DGAL           QT  VLRQA  E
Sbjct: 21  AGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLE 58



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 401 EVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAE 508
           +V+ A+R+ DGAL           QT  VLRQA  E
Sbjct: 93  QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLE 128


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 489  STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 349
            ST+     T +  STTT A      ++ TS  +     E+ + IKKP
Sbjct: 2817 STIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863


>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -2

Query: 471 THTPDTQSTTTRAPSVTRSAAVTSEEKST 385
           T TP+TQSTTT  P  T+S   T E +ST
Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372


>SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 478 SLYTHTRHTVNNHKGSIS-DTECSCYFRREIN 386
           S Y+ + HT+N+H+ + + +T C+C ++  ++
Sbjct: 192 SPYSLSHHTINSHRKAYNEETSCTCRYKEGVS 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,538,554
Number of Sequences: 59808
Number of extensions: 482167
Number of successful extensions: 1577
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)