Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0056
         (481 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -1

Query: 148  PMFTITHLTQSPKNKSLK*HNRVIKTSLE*KSLGNSNV 35
            P+F  TH T +P+N SL  H R +  S+  ++L  SNV
Sbjct: 3180 PVFLTTHHTLTPRNASLFVH-RNLFNSVFYEALSKSNV 3216


>SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1644

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 148 PMFTITHLTQSPKNKSLK*HNRVIKTSLE*KSLGNSNV 35
           P+F  TH T +P+N SL  H R++   +  ++L  SNV
Sbjct: 333 PVFLTTHHTLTPRNASLFVH-RILFNIVFYEALSKSNV 369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,960,554
Number of Sequences: 59808
Number of extensions: 265495
Number of successful extensions: 620
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)