Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0053
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)              157   5e-39
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)             31   0.38 
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        29   1.2  
SB_41705| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)                   29   2.0  
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)                  28   2.7  
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)                28   2.7  
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)                       28   3.6  
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           27   4.7  
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)           27   4.7  
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_54694| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)                27   6.2  
SB_31308| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_4809| Best HMM Match : SRF-TF (HMM E-Value=5.5)                     27   8.2  
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     27   8.2  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score =  157 bits (380), Expect = 5e-39
 Identities = 76/114 (66%), Positives = 94/114 (82%)
 Frame = +3

Query: 3   STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 182
           S KI+K  G  A+ FE  ISQA++ELE NSD+KAQLRELYI+ AKEI++  KK+III+VP
Sbjct: 8   SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67

Query: 183 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 344
           +P+++AFQKIQ RLVRELEKKFSGKHVV V  R+ILP+P+ K+R   KQKRPRS
Sbjct: 68  VPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120


>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
          Length = 812

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
 Frame = +3

Query: 87  NSDLKAQLRELYITKAKEIE---LHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFS-- 251
           + + K  L+E+ I ++K+ E   + + KS       PKLKA Q    +   +  KK    
Sbjct: 261 HEEKKEDLKEVVIKQSKQDEATAIKDSKSESKPASKPKLKAVQNDAPKKANKPAKKAKKP 320

Query: 252 ---GKHVVFVGDRKILPKPSHKTRVANKQKRPRS 344
               K V+       LP+ +H+   AN Q+RP++
Sbjct: 321 VKRAKKVLNKKKMDTLPRGAHRPASANAQRRPQN 354


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
 Frame = +3

Query: 12   IIKASGAEADSFETSISQALVELETNSDLKAQLRE----LYITKAKEIELHNKKSIIIYV 179
            ++++SG   +S E+   +     E N+ LK +L E    L +T+ +E E+ N K + +YV
Sbjct: 1681 VLESSGGTMNSEESFFLE-----EDNAILKRKLDEKETALKVTQDREREM-NDKLMALYV 1734

Query: 180  PMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILP-KPSHKTRVANKQ 329
             M KL++ Q        ELEK+      ++   ++I P K S  T VA  +
Sbjct: 1735 NMSKLESTQGTLEEKNAELEKE------LYSAQQEIQPLKDSFNTAVAENE 1779


>SB_41705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 258 HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEGGPGTQFAL 407
           H   V DR+ LP      +V +++   + R +  VY  +LE G G+Q  +
Sbjct: 84  HDPLVRDRRALPPSRSADQVTDREAIDQCRDILGVYSGVLEKG-GSQLMI 132


>SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)
          Length = 237

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 326 FVSNTSFVAGLRQDLTVSNKDYMFTTE 246
           F+ N SFV+ +  DLT S+ D+ + TE
Sbjct: 40  FIPNLSFVSAVLWDLTKSSSDFQWHTE 66


>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
          Length = 1552

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 39  DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 206
           + ++T ++     L  +  L+  +RELY    +E E   KKS++ ++ + PK+K  +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227


>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1831

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 91   PTSKPNFGSFTLQKLKKLNYTIRS 162
            P S  N+G FT+++LK  +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438


>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
          Length = 513

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 296 LRQDLTVSNKDYMFTTELLFELTDKPDLNLLKGLQFRHRHIDDDRLL 156
           LRQ L  SN        +L  L  K D+   K      +H+ DD LL
Sbjct: 170 LRQRLNSSNPSISSPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 216


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
 Frame = +1

Query: 70  WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 168
           WS+ KPTP  KPN        FG   T Q L+K N+ +  RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166


>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2653

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 344 KDIDLCVRCYPRGGARYPIRP 406
           +D+ +C  C P GG R P+ P
Sbjct: 620 QDMTICSACAPPGGGRNPVTP 640


>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
          Length = 151

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +3

Query: 177 VPMPKLKAFQKIQIRLVRELEKKFSG 254
           VP+P++ A QK++ +L R++E+K +G
Sbjct: 69  VPLPQVSAMQKVKGKL-RDMEQKLNG 93


>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 20/101 (19%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
 Frame = +3

Query: 30  AEADSFETSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKL 194
           A+  +   +  Q   E++T+ + K  +RE  ITK K +     E   +++++    + K+
Sbjct: 237 AQRKTLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKV 296

Query: 195 KAFQKIQIRLVRELEKKF---SGKHVVFVGDRKILPKPSHK 308
               + + + +RE+E++F     K+   + +R++  +   K
Sbjct: 297 AKLYEEEKQDLREMEQEFQNMEAKYNAILEERRLAAEAEKK 337


>SB_54694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 291 PKPSHKTRVANKQKRPRSRTLTSVYDAILEGGPGTQF 401
           P P +++ V N   RP +R+  + YD + +GG  TQ+
Sbjct: 43  PVPQYES-VNNAPVRPPNRSNVTQYDDVTQGGNVTQY 78


>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
          Length = 493

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 296 LRQDLTVSNKDYMFTTELLFELTDKPDLNLLKGLQFRHRHIDDDRLL 156
           LRQ L  SN        +L  L  K D+   K      +H+ DD LL
Sbjct: 40  LRQRLNSSNPGISNPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 86


>SB_31308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 306 KTRVANKQKRPRSRTLTSVYDAILEGGPGT 395
           +T+++N  KRPR R ++   + I   GPGT
Sbjct: 255 ETKISNT-KRPRHRHISLCQETITRHGPGT 283


>SB_4809| Best HMM Match : SRF-TF (HMM E-Value=5.5)
          Length = 311

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
 Frame = +3

Query: 87  NSDLKAQLREL-YITKAKEIELHNKKSIIIYVP--MPKLKAFQKIQIRLVRELEKKFSGK 257
           N   K  +R + YI K  E+    K+ +++     M +++     + +L+ +  +     
Sbjct: 51  NKAKKGVIRTVGYINKGNEVISTKKRKLLMKHSRDMLEVQVISTKKRKLLMKHSRDMLEV 110

Query: 258 HVVFVGDRKILPKPSH---KTRVANKQKR 335
            V+F+ +RK+L K SH   K +V   +KR
Sbjct: 111 QVIFIKERKLLTKHSHDLVKVQVIFTKKR 139


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 296 LRQDLTVSNKDYMFTTELLFELTDKPDLNLLKGLQFRHRHIDDDRLL 156
           LRQ L  SN        +L  L  K D+   K      +H+ DD LL
Sbjct: 40  LRQRLNSSNPSKSNPINILDALCQKHDIAYSKSKDLDDKHLADDNLL 86


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +3

Query: 177 VPMPKLKAFQKIQIRLVRELEKKFSG 254
           VP+P+++A QK++  L R +E+K +G
Sbjct: 190 VPLPQVRAMQKVKGEL-RNMEQKLNG 214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,843,666
Number of Sequences: 59808
Number of extensions: 248799
Number of successful extensions: 810
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)