Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0129
         (430 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               31   0.41 
SB_20704| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.71 
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.94 
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)                29   1.6  
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)                29   1.6  
SB_57109| Best HMM Match : DUF1280 (HMM E-Value=7.4)                   27   8.7  
SB_37154| Best HMM Match : WD40 (HMM E-Value=7.00649e-45)              27   8.7  
SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)                   27   8.7  

>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 377 LRSQVIVQRLPHPSNRNALLLHGRNRQ 297
           LR Q  VQR P P+ RN++ LHG   Q
Sbjct: 24  LRQQNQVQRRPEPTPRNSIFLHGLRAQ 50


>SB_20704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -1

Query: 280 PAQTHKRSYHQ*KTCIGIVFFFFRNQ-TLKIPSTRKQRTSSKATGDFSNNTFRE-LCEAA 107
           PAQ    + H+  T  G+   FF NQ      S RKQ ++SK + D     F +   +A 
Sbjct: 15  PAQIRTETDHKTTTASGLPSDFFENQPETTQESDRKQSSNSKPSEDLPEGFFDDPKLDAK 74

Query: 106 TSAHLISND 80
            S  L+  D
Sbjct: 75  VSEALVEED 83


>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 72  FEASFEIRCADVAASHSS-LNVLFEKSPVALELVRCFLVEGIFRVWFLKKKKTIPIHVFY 248
           F + +   C DV +   + LN+  ++SPVA  L    +++     ++LK +   P +V  
Sbjct: 380 FGSGYTWLCQDVTSGFLTILNMGNQESPVAYRLNPVLVIDLWEHAFYLKHQNKRPGYVHS 439

Query: 249 WW 254
           WW
Sbjct: 440 WW 441


>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
          Length = 190

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 209 EPNPEDPLNKEAADELQSNRRLF 141
           EPNP+DPL  E ++E + N+  F
Sbjct: 81  EPNPDDPLMAEISNEFKYNKAQF 103


>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
          Length = 204

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 209 EPNPEDPLNKEAADELQSNRRLF 141
           EPNP+DPL  E ++E + N+  F
Sbjct: 95  EPNPDDPLMAEISNEFKYNKAQF 117


>SB_57109| Best HMM Match : DUF1280 (HMM E-Value=7.4)
          Length = 605

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 405 YRAPPRDIRSKVSSNSSTAAPPFKPKRITASR 310
           Y   PR  R  V  N+   +PP K KRI   R
Sbjct: 232 YNTWPRKTRFTVDCNAEPLSPPTKQKRIIGLR 263


>SB_37154| Best HMM Match : WD40 (HMM E-Value=7.00649e-45)
          Length = 870

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 405 YRAPPRDIRSKVSSNSSTAAPPFKPKRITASR 310
           Y   PR  R  V  N+   +PP K KRI   R
Sbjct: 232 YNTWPRKTRFTVDCNAEPLSPPTKQKRIIGLR 263


>SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 24  YYLYGC*HFLHVCRFSFEASFEIRCADVAASHSSLNVLF 140
           + LY C H LH C     A   +  A +   ++ L VL+
Sbjct: 146 HVLYACLHVLHACLHVLYACLHVLYACLRVLYACLRVLY 184


>SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)
          Length = 1296

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 222  FFFLGTKP*RSPQQGSSGRAPKQQATFRTTRSESYARRLRR 100
            F+  G++P R+P   SSG    Q ++  T   ES   + RR
Sbjct: 977  FYRAGSRPARTPSNASSGVFSVQVSSSETNSIESSPHQSRR 1017


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,692,745
Number of Sequences: 59808
Number of extensions: 281897
Number of successful extensions: 953
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)