Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0122
(321 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43636| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-31) 31 0.28
SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 29 0.84
SB_890| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.5
SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_43635| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08) 27 4.5
SB_45120| Best HMM Match : GFP (HMM E-Value=3.3e-17) 26 7.9
>SB_43636| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-31)
Length = 355
Score = 30.7 bits (66), Expect = 0.28
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 22 CLHPPLYCLLTNTNILFLVNMNYLLTFPNLKVVNALAYF-ISCNNIIL*K-YLQIF 183
C+ P Y L + +F+ NY PNLKV + Y SC+ ++L Y++IF
Sbjct: 154 CIVPVPY-LASGEKYIFVPGKNYCFQKPNLKVASLCVYLNCSCSMLVLTVCYIKIF 208
>SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
Length = 772
Score = 29.1 bits (62), Expect = 0.84
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 40 YCLLTNTNILFLVNMNYLLT--FPNLKVVNALAYFISCNNIIL 162
YC +T +LFL N+ LL P+ +V AL Y I C ++I+
Sbjct: 343 YCCQGSTYVLFLTNVTLLLRPFSPSFLIVAALCY-IYCLHLII 384
>SB_890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 58 TNILFLVNMNYLLTFPNLKVVNALAYFIS 144
TN+ + NM YL+T NL V+ +AY I+
Sbjct: 149 TNVAVITNMAYLIT--NLAVITNMAYLIT 175
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 58 TNILFLVNMNYLLTFPNLKVVNALAYFIS 144
TN+ + NM YL+T N+ V+ +AY I+
Sbjct: 19 TNVAVITNMAYLIT--NVAVITNMAYLIT 45
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 58 TNILFLVNMNYLLTFPNLKVVNALAYFIS 144
TN+ + NM YL+T N+ V+ +AY I+
Sbjct: 45 TNVAVITNMAYLIT--NVAVITNMAYLIT 71
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 58 TNILFLVNMNYLLTFPNLKVVNALAYFIS 144
TN+ + NM YL+T N+ V+ +AY I+
Sbjct: 71 TNVAVITNMAYLIT--NVAVITNMAYLIT 97
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 58 TNILFLVNMNYLLTFPNLKVVNALAYFIS 144
TN+ + NM YL+T N+ V+ +AY I+
Sbjct: 97 TNVAVITNMAYLIT--NVAVITNMAYLIT 123
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 58 TNILFLVNMNYLLTFPNLKVVNALAYFIS 144
TN+ + NM YL+T N+ V+ +AY I+
Sbjct: 123 TNVAVITNMAYLIT--NVAVITNMAYLIT 149
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 58 TNILFLVNMNYLLTFPNLKVVNALAYFIS 144
TN+ + NM YL+T N+ V+ +AY I+
Sbjct: 175 TNVAVITNMAYLIT--NVAVITNMAYLIT 201
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 58 TNILFLVNMNYLLTFPNLKVVNALAYFIS 144
TN+ + NM YL+T N+ V+ +AY I+
Sbjct: 201 TNVAVITNMAYLIT--NVAVITNMAYLIT 227
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 58 TNILFLVNMNYLLTFPNLKVVNALAYFIS 144
TN+ + NM YL+T N+ V+ +AY I+
Sbjct: 227 TNVAVITNMAYLIT--NVAVITNMAYLIT 253
>SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 58 TNILFLVNMNYLLTFPNLKVVNALAYFIS 144
TN+ + NM YL+T N+ V+ +AY I+
Sbjct: 6 TNVAVITNMAYLIT--NVAVITNMAYLIT 32
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 58 TNILFLVNMNYLLTFPNLKVVNALAYFIS 144
TN+ + NM YL+T N+ V+ +AY I+
Sbjct: 32 TNVAVITNMAYLIT--NVAVITNMAYLIT 58
>SB_43635| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08)
Length = 237
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 22 CLHPPLYCLLTNTNILFLVNMNYLLTFPNLKVVNALAYFI-SCNNIIL*K-YLQIF 183
C+ P Y L + +F+ NY PN K+ + Y SC ++L Y++IF
Sbjct: 154 CIVPVPY-LASGEKYIFIPGKNYCFQKPNTKIASMCVYLNGSCVMLVLTACYIKIF 208
>SB_45120| Best HMM Match : GFP (HMM E-Value=3.3e-17)
Length = 319
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 40 YCLLTNTNILFLVNMNYLLTFPNLKV 117
YC NT++LF +++Y +TF + +
Sbjct: 79 YCTAVNTSVLFNGSLHYHVTFHGINL 104
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,566,120
Number of Sequences: 59808
Number of extensions: 122442
Number of successful extensions: 277
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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