Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0105
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              39   0.004
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)                   39   0.004
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)                  39   0.004
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)                39   0.004
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)           39   0.004
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)                       39   0.004
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.004
SB_4159| Best HMM Match : Vpu (HMM E-Value=2)                          39   0.004
SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)                    36   0.034
SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5)                    33   0.14 
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)                     33   0.18 
SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)                32   0.42 
SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1)                29   2.3  
SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)                      28   5.2  
SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)            27   9.1  

>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 598 PVNCNTTHYRANWGTGA 548
           PVNCNTTHYRANW + A
Sbjct: 12  PVNCNTTHYRANWSSTA 28


>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 598 PVNCNTTHYRANWGTGA 548
           PVNCNTTHYRANW + A
Sbjct: 68  PVNCNTTHYRANWSSTA 84


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 598 PVNCNTTHYRANWGTGA 548
           PVNCNTTHYRANW + A
Sbjct: 636 PVNCNTTHYRANWSSTA 652


>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 598 PVNCNTTHYRANWGTGA 548
           PVNCNTTHYRANW + A
Sbjct: 47  PVNCNTTHYRANWSSTA 63


>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
          Length = 257

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 598 PVNCNTTHYRANWGTGA 548
           PVNCNTTHYRANW + A
Sbjct: 9   PVNCNTTHYRANWSSTA 25


>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
          Length = 117

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 598 PVNCNTTHYRANWGTGA 548
           PVNCNTTHYRANW + A
Sbjct: 49  PVNCNTTHYRANWSSTA 65


>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 598  PVNCNTTHYRANWGTGA 548
            PVNCNTTHYRANW + A
Sbjct: 1887 PVNCNTTHYRANWSSTA 1903


>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 598 PVNCNTTHYRANWGTGA 548
           PVNCNTTHYRANW + A
Sbjct: 47  PVNCNTTHYRANWSSTA 63


>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 598 PVNCNTTHYRANWGTGA 548
           PVNCNTTHYRANW + A
Sbjct: 9   PVNCNTTHYRANWSSTA 25


>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
          Length = 768

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 598 PVNCNTTHYRANWGTGA 548
           PVNCNTTHYRANW + A
Sbjct: 41  PVNCNTTHYRANWSSTA 57


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 598 PVNCNTTHYRANWGTGA 548
           PVNCNTTHYRANW + A
Sbjct: 90  PVNCNTTHYRANWSSTA 106


>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 598 PVNCNTTHYRANWGTGA 548
           PVNCNTTHYRANW + A
Sbjct: 68  PVNCNTTHYRANWSSTA 84


>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
          Length = 281

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 598 PVNCNTTHYRANWGTGA 548
           PVNCNTTHYRANW + A
Sbjct: 79  PVNCNTTHYRANWSSTA 95


>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 598 PVNCNTTHYRANWGTGA 548
           PVNCNTTHYRANW + A
Sbjct: 55  PVNCNTTHYRANWSSTA 71


>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
          Length = 779

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 598 PVNCNTTHYRANWGTGA 548
           PVNCNTTHYRANW + A
Sbjct: 79  PVNCNTTHYRANWSSTA 95


>SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)
          Length = 142

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +2

Query: 554 GTPIRPIVSRITIHW 598
           G PIRPIVSRITIHW
Sbjct: 37  GAPIRPIVSRITIHW 51


>SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5)
          Length = 131

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = +2

Query: 554 GTPIRPIVSRITIHW 598
           G PIRPIVS ITIHW
Sbjct: 39  GAPIRPIVSHITIHW 53


>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
          Length = 237

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 598 PVNCNTTHYRAN 563
           PVNCNTTHYRAN
Sbjct: 86  PVNCNTTHYRAN 97


>SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 598 PVNCNTTHYRAN 563
           PVNCNTTHYRAN
Sbjct: 29  PVNCNTTHYRAN 40


>SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)
          Length = 444

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 88  RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 201
           +T+R V+T P  L +  RLH  H +HC     L +R V
Sbjct: 370 QTVRIVQTPPDRLCALYRLHHTHSAHCTDTTRLTVRTV 407



 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 88  RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 201
           +TLR V+T P  L +  R H+ H +HC       +R V
Sbjct: 210 QTLRIVQTPPDRLCALYRFHQTHCAHCTDFTRQTVRTV 247


>SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 563 IRPIVSRITIHW 598
           IRPIVSRITIHW
Sbjct: 18  IRPIVSRITIHW 29


>SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1)
          Length = 616

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 324 MFYCYFKIFIITSNLSGARVMFSVRVASSRVYEFLSSWFR 443
           + +C  K+F+I SNL    ++ +   ++SR     S WF+
Sbjct: 147 LVFCLTKVFLIESNLPALDIVKNKIDSASRYLHVFSKWFQ 186


>SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +2

Query: 563 IRPIVSRITIHW 598
           +RP+VSRITIHW
Sbjct: 33  LRPVVSRITIHW 44


>SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)
          Length = 498

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 68  LNIDISNAHCGPWRHIQDHSCLRAGCIKN 154
           L +D+ NA  GPW  I+ H C +  C+ N
Sbjct: 287 LKLDMGNA--GPWGDIKIHPCDKPKCLTN 313


>SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 101 PWRHIQDHSCLRAGCIKNI 157
           PWR+  DH CL+   I N+
Sbjct: 5   PWRNAADHHCLKTAIIFNV 23


>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
          Length = 524

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 88  RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 201
           +T+R+V+T P  L +  R H+   +HC       +R V
Sbjct: 365 QTVRTVQTSPDRLCALYRFHQTDCAHCTVTTRQTVRSV 402


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,179,015
Number of Sequences: 59808
Number of extensions: 313594
Number of successful extensions: 847
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)