Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0086
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)                     29   3.5  
SB_37802| Best HMM Match : RnaseH (HMM E-Value=0.69)                   29   4.6  
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_52987| Best HMM Match : RBM1CTR (HMM E-Value=7)                     28   8.1  
SB_23695| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_1289| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3)              28   8.1  
SB_59606| Best HMM Match : rve (HMM E-Value=0.00032)                   28   8.1  
SB_58483| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3)             28   8.1  
SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)                 28   8.1  
SB_38271| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59)             28   8.1  
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_15193| Best HMM Match : rve (HMM E-Value=0.00021)                   28   8.1  
SB_14783| Best HMM Match : rve (HMM E-Value=0.00014)                   28   8.1  
SB_9972| Best HMM Match : rve (HMM E-Value=0.16)                       28   8.1  

>SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = +3

Query: 6   LSHRNISKVGVVLIGY*INYHRV--SSKRISL----VSSKHKMRAFVVLACVAMAYGRPE 167
           +SH  +  + + +IGY  +YHRV   S  I L    +SS H++  F+ L       G P 
Sbjct: 637 VSHFLLLGIPLRIIGYPTSYHRVVFLSSGIPLPIIGLSSYHRVSHFLSLGIPLPIIGIPL 696

Query: 168 PPVGYSYSAPR 200
           P +GY  S  R
Sbjct: 697 PIIGYPTSYHR 707


>SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
 Frame = -3

Query: 464 NIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESI---RRVSAAKGNAAS 294
           N D+F  +++ + + R S T+S+I   +    +A    TT++++I   +   A++G    
Sbjct: 493 NKDIFRKQKTVQNTFRTSKTKSNIAELSMAVKSAARAKTTQSQNITKNKEEKASEGKGER 552

Query: 293 RKAT*GSRMTTNSNSSVS 240
           +K T      T+S +S S
Sbjct: 553 KKNTSRPSSVTSSLTSSS 570


>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 382 ASEVMLDSVADMRVDTLVLLLYRNTSMFTYLPQNQLSKDFLVSL 513
           A +V  +   D++V  L  LL  NTSMF+   QN +SK  ++ L
Sbjct: 266 ARKVFTNKTQDIKVSKLTRLLVANTSMFS---QNLVSKSAVIKL 306


>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
          Length = 2478

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
 Frame = -3

Query: 488  NWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAA----AKGESTTETESIRRV 321
            N    +Y N+D   YKR T    +     +S+ SE+Q +       + E T     + +V
Sbjct: 1263 NQLMEQYRNVDPDEYKRMTEEKKQFQQHVASLKSESQRSKTLLENVRNELTKTKAELTKV 1322

Query: 320  SAAKGNAASRKAT*GSRMTTNSNSSVSAADRGRAE 216
             A   N  + +    S+M    + S S   + +AE
Sbjct: 1323 QAELLNVKNDQQKAQSQMEAIKSQSTSVEGKNQAE 1357


>SB_37802| Best HMM Match : RnaseH (HMM E-Value=0.69)
          Length = 756

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 530 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 640
           +TL +  H+  NS+H+Y   +  PT   R  T I  G
Sbjct: 563 QTLIEKQHEQRNSNHAYSEKSKAPTADFRPSTAITVG 599


>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1505

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 530  ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 640
            +TL +  H   NS+H+Y   +  PT   R  T I  G
Sbjct: 1312 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 1348


>SB_52987| Best HMM Match : RBM1CTR (HMM E-Value=7)
          Length = 247

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 530 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 640
           +TL +  H   NS+H+Y   +  PT   R  T I  G
Sbjct: 54  QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 90


>SB_23695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 530 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 640
           +TL +  H   NS+H+Y   +  PT   R  T I  G
Sbjct: 180 QTLIEKQHNQRNSNHAYSEKSKAPTADFRPSTAITVG 216


>SB_1289| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3)
          Length = 405

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 530 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 640
           +TL +  H   NS+H+Y   +  PT   R  T I  G
Sbjct: 212 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 248


>SB_59606| Best HMM Match : rve (HMM E-Value=0.00032)
          Length = 404

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 530 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 640
           +TL +  H   NS+H+Y   +  PT   R  T I  G
Sbjct: 211 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 247


>SB_58483| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3)
          Length = 134

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 530 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 640
           +TL +  H   NS+H+Y   +  PT   R  T I  G
Sbjct: 54  QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 90


>SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 530  ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 640
            +TL +  H   NS+H+Y   +  PT   R  T I  G
Sbjct: 1042 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 1078


>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
          Length = 769

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 24/74 (32%), Positives = 30/74 (40%)
 Frame = -3

Query: 440 RSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTT 261
           + +  STR S   S  TS   T  +A    T  T    R SAAK N   + +  GSRM  
Sbjct: 669 KDSTCSTRGSRDTSRDTSCKDTTGSA---GTRPTRQSPRKSAAKNNETPKSSRKGSRMYR 725

Query: 260 NSNSSVSAADRGRA 219
               S    D G +
Sbjct: 726 ERTLSRRKRDIGNS 739


>SB_38271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 530 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 640
           +TL +  H   NS+H+Y   +  PT   R  T I  G
Sbjct: 399 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 435


>SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59)
          Length = 810

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 530 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 640
           +TL +  H   NS+H+Y   +  PT   R  T I  G
Sbjct: 617 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 653


>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 24/74 (32%), Positives = 30/74 (40%)
 Frame = -3

Query: 440  RSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTT 261
            + +  STR S   S  TS   T  +A    T  T    R SAAK N   + +  GSRM  
Sbjct: 1336 KDSTCSTRGSRDTSRDTSCKDTTGSA---GTRPTRQSPRKSAAKNNETPKSSRKGSRMYR 1392

Query: 260  NSNSSVSAADRGRA 219
                S    D G +
Sbjct: 1393 ERTLSRRKRDIGNS 1406


>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
 Frame = -3

Query: 440 RSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRV------SAAKGNAASRKAT* 279
           RS+ +S  + ++  SI    +T+   +  ST  + +  R+      +     A+SR++  
Sbjct: 183 RSSSISPGMRSSLGSIAPPPRTSTP-RSRSTLRSRAGSRIRTPSTPTTTSSRASSRESAR 241

Query: 278 GSRMTTNSNSSVSAADRGR 222
           G+R TT +   V+   RGR
Sbjct: 242 GTRTTTTTKKCVTRKSRGR 260


>SB_15193| Best HMM Match : rve (HMM E-Value=0.00021)
          Length = 544

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 530 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 640
           +TL +  H   NS+H+Y   +  PT   R  T I  G
Sbjct: 464 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 500


>SB_14783| Best HMM Match : rve (HMM E-Value=0.00014)
          Length = 496

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 530 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 640
           +TL +  H   NS+H+Y   +  PT   R  T I  G
Sbjct: 353 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 389


>SB_9972| Best HMM Match : rve (HMM E-Value=0.16)
          Length = 514

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 530 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 640
           +TL +  H   NS+H+Y   +  PT   R  T I  G
Sbjct: 321 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,643,634
Number of Sequences: 59808
Number of extensions: 293038
Number of successful extensions: 1155
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)