Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0066
(310 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59) 27 4.1
SB_39796| Best HMM Match : VWA (HMM E-Value=0) 27 4.1
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_19660| Best HMM Match : ATP-synt_8 (HMM E-Value=3.2) 27 4.1
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_38066| Best HMM Match : FlaF_arch (HMM E-Value=1.2) 26 7.2
SB_57662| Best HMM Match : Drf_FH1 (HMM E-Value=5.8) 26 7.2
SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063) 26 7.2
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_19851| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1) 25 9.5
>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
Length = 625
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 226 GSFRSTNSAFRFLKHQSSFSSNASLATKGSTS 131
GS ST++ KH S S+A + TKG+T+
Sbjct: 492 GSMESTSNDSPLRKHSSPSLSDAIMRTKGTTN 523
>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
Length = 2119
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 184 HQSSFSSNASLATKGSTSKLTHRHQ*VSRQIFSVGRVSNPAV 59
H +S S+ S ATK T+ TH H +I S V++P V
Sbjct: 2077 HVTSTSTTVSTATKTETTTATH-HTTKLEEITSTAIVTSPTV 2117
>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/70 (24%), Positives = 25/70 (35%)
Frame = -1
Query: 271 PAYNTEWSAAPHRHFGSFRSTNSAFRFLKHQSSFSSNASLATKGSTSKLTHRHQ*VSRQI 92
P N+ +A RH S + + + H S + NA + G TS Q +
Sbjct: 137 PTNNSGHAANNARHPASIKDSYNIANASAHSSGGTVNAQITVSGKTSSSDADQQHTVNAV 196
Query: 91 FSVGRVSNPA 62
NPA
Sbjct: 197 QPANNTGNPA 206
>SB_19660| Best HMM Match : ATP-synt_8 (HMM E-Value=3.2)
Length = 178
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 190 LKHQSSFSSNASLATKGSTSKLTHRH 113
+ SS SS +SL+T STSK H H
Sbjct: 135 ISSSSSSSSLSSLSTSSSTSKHHHHH 160
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -1
Query: 202 AFRFLKHQSSFSSNASLATKGSTSKLTHRHQ*VSRQIFSVGRVSNPAVGSAKH 44
A + + Q S+SS L +T+KL +RH V R+ S ++ AV KH
Sbjct: 1866 ALKIKQEQKSYSSLQPLIF--ATAKLHNRHHPVFRETISSYTLNISAVDCGKH 1916
>SB_38066| Best HMM Match : FlaF_arch (HMM E-Value=1.2)
Length = 427
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 87 EKIWRETHWCLWVSLLVEPFVASDA 161
E+ +T W LW +EPF DA
Sbjct: 34 EQFENDTPWVLWGRTKMEPFAIDDA 58
>SB_57662| Best HMM Match : Drf_FH1 (HMM E-Value=5.8)
Length = 157
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 5/26 (19%)
Frame = -3
Query: 290 SEQVAPPCVQH-----RVVSGATPSF 228
S+QVAP V H RVV G+TPSF
Sbjct: 98 SQQVAPAGVLHTRNSTRVVPGSTPSF 123
>SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)
Length = 597
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 280 WRPPAYNTEWSAAPHRHFGSFRSTNSAFRFL-KHQSSFSSNASLAT 146
W P A +++ + H SF++TN+ F+ K+ + S +S +T
Sbjct: 49 WEPKASSSQKESKEHNIVCSFKTTNTVTEFIGKNHTERRSGSSDST 94
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 232 HFGSFRSTNSAFRFLKHQSSFSSNASLATKGSTSKLTHRHQ*VSRQI 92
H S S +SAF F+K + SS+ + K H+ + VS I
Sbjct: 1980 HSVSRESASSAFSFIKEDYNSSSSDDMGEPLKLDKFEHQRKHVSLAI 2026
>SB_19851| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 10 DDVANTNPIKSRASQNLPP 66
DD N N K+ AS+NLPP
Sbjct: 160 DDDDNNNKKKASASKNLPP 178
>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
Length = 461
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -1
Query: 235 RHFGSFRSTNSAFRFLKHQSSFSSNASL---ATKGSTSKLTHRHQ 110
RH GS+RSTN + ++ + + + +T G+T L +Q
Sbjct: 272 RHPGSYRSTNLPMLYARYDTLTRTGVPIHPCSTHGTTPSLAQEYQ 316
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,489,254
Number of Sequences: 59808
Number of extensions: 160067
Number of successful extensions: 407
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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